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LOCUS	    FJ812576		    2108 bp    RNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A06_022306_PX_4226 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812576
VERSION     FJ812576.1 GI:226347566
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2108)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2108)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2108
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="H2A06_022306_PX_4226"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="23-Feb-2006"
		     /note="group: A"
     gene	     <1..>2108
		     /gene="pol"
     CDS	     <1..>2108
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50194.1"
		     /db_xref="GI:226347567"
		     /translation="CGPSPAGADTNSTPSRSGSGPTGEIHAAREEAERAETETIQRGD
		     RGLTTPRAGRNTMQRDDRGFAAPQFSLWKRPVVTALIEGQPVEVLLDTGADDSIVAGV
		     ELGSNYSPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGETPINIFGRNILTALG
		     MSLNLPVAKIEPVKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEREGQLEEASPT
		     NPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLAKKRRITVLDV
		     GDAYFSIPLYEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQFTMRQILE
		     PFRKANPDVILIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPF
		     QWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRG
		     KMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVHKDQDNQWTYKIHQ
		     GEKILKVGKYAKVKNTHTNGVRLLAHVVQKIGKEALVIWGRIPKFHLPVERETWEQWW
		     DDYWQVTWIPDWDFVSTPPLVRLAFNLVKDPIPGEETFYTDGSCNKQSKEGKAGYITD
		     RGRDKVKVLEQTTNQQAELEAFAMAIMDSGPRANIVVDSQYVIGIIAGQPTESESRIV
		     NQIIEEMIKKEAIYVAWVPA"
BASE COUNT	813 a	 405 c	  486 g    404 t
ORIGIN
       1 cctgtggccc aagtcccgca ggggctgaca ccaacagcac ccccagtaga tccggcagcg 
      61 gacctactgg agaaatacat gcagcaaggg aggaagcaga gagagcagag acagagacca 
     121 tacaaagagg tgacagagga cttactacac ctcgagcagg aagaaacacc atgcagagag 
     181 acgacagagg atttgctgca cctcaattct ctctttggaa aagaccagta gtcacagcac 
     241 taattgaggg tcagccagta gaagttctac tggacacagg ggctgacgac tcaatagtag 
     301 caggggtaga attagggagc aattatagtc caaagatagt agggggaata gggggattca 
     361 taaataccaa ggaatacaaa aatgtagaga taaaagtact gaataagaga gtaagggcca 
     421 ccataatgac aggtgagacc ccaatcaaca tttttggcag aaacattctg acagccttag 
     481 gcatgtcatt aaatctgcca gttgccaaga ttgaaccagt aaaagtaaca ttgaagccag 
     541 gaaaggatgg accaaaactg aggcaatggc ccttaaccaa agaaaaaata gaggcactaa 
     601 aagagatctg tgagaaaatg gagagggagg gccagctaga ggaagcatct ccaaccaatc 
     661 cttataatac ccccacattt gcaatcaaga aaaaggacaa aaacaaatgg agaatgctaa 
     721 tagattttag agaactaaac aaagtaaccc aagaattcac agaggtccag ttaggaattc 
     781 cacacccggc aggattagcc aaaaagagaa gaattactgt actagatgta ggggatgctt 
     841 acttttccat accactatat gaagatttta gacaatatac tgcatttact ctaccatcag 
     901 tcaacaatgc tgaaccagga aaaagataca tatataaagt cttaccacag ggatggaagg 
     961 gatcaccagc aatttttcag ttcacaatga ggcagatctt agaaccattt agaaaagcaa 
    1021 acccggatgt cattctcatc cagtacatgg atgatatttt aatagctagt gacaggacag 
    1081 atttagagca tgacagagta gtcctgcagt taaaagaact cctaaatggc ttaggatttt 
    1141 ccaccccaga tgagaagttc caaaaggacc ctccattcca atggatggga tatgaactgt 
    1201 ggccaactaa atggaagttg caaaaaatac agttgcccca aaaggaagta tggacagtca 
    1261 atgacatcca aaagttagtg ggtgtcctaa attgggcagc acaaatctac ccagggataa 
    1321 agaccaaaca cttgtgtagg ctaatcagag gaaaaatgac actcacagaa gaggtacagt 
    1381 ggacagaatt agcagaagca gagctagaag aaaacaaaat tatcttaagc caggaacaag 
    1441 agggatgcta ttaccaagag gaaaaagaac tagaggcaac agtccacaaa gatcaagaca 
    1501 atcagtggac atataaaata catcagggag agaaaattct aaaggtagga aaatatgcaa 
    1561 aggtaaaaaa tacccacact aacggagtca gactattagc acatgtagtc cagaaaatag 
    1621 gaaaagaagc actagttatt tggggacgaa taccaaaatt tcacctacca gtagaaagag 
    1681 agacctggga acagtggtgg gatgattact ggcaagtaac atggatccca gactgggact 
    1741 tcgtgtccac cccaccatta gtcaggttag catttaacct ggtaaaagat cccataccag 
    1801 gcgaagagac cttctacaca gatggatcct gcaataagca atcaaaagaa ggaaaagcag 
    1861 gatacataac agatagagga agggataaag tgaaggtgtt agagcaaacc accaatcagc 
    1921 aagcagaatt agaagccttt gcaatggcaa taatggactc aggtccaaga gccaacattg 
    1981 tagtggactc acaatatgta ataggaataa tagcaggcca accaacagag tcagagagta 
    2041 gaatagtaaa tcaaatcata gaagagatga taaagaaaga agcaatctat gttgcatggg 
    2101 tcccagcc
//
last modified: Tue May 31 10:56 2022


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