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LOCUS FJ812576 2108 bp RNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A06_022306_PX_4226 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812576
VERSION FJ812576.1 GI:226347566
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2108)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2108)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2108
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="H2A06_022306_PX_4226"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="23-Feb-2006"
/note="group: A"
gene <1..>2108
/gene="pol"
CDS <1..>2108
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50194.1"
/db_xref="GI:226347567"
/translation="CGPSPAGADTNSTPSRSGSGPTGEIHAAREEAERAETETIQRGD
RGLTTPRAGRNTMQRDDRGFAAPQFSLWKRPVVTALIEGQPVEVLLDTGADDSIVAGV
ELGSNYSPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGETPINIFGRNILTALG
MSLNLPVAKIEPVKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEREGQLEEASPT
NPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLAKKRRITVLDV
GDAYFSIPLYEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQFTMRQILE
PFRKANPDVILIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPF
QWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRG
KMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVHKDQDNQWTYKIHQ
GEKILKVGKYAKVKNTHTNGVRLLAHVVQKIGKEALVIWGRIPKFHLPVERETWEQWW
DDYWQVTWIPDWDFVSTPPLVRLAFNLVKDPIPGEETFYTDGSCNKQSKEGKAGYITD
RGRDKVKVLEQTTNQQAELEAFAMAIMDSGPRANIVVDSQYVIGIIAGQPTESESRIV
NQIIEEMIKKEAIYVAWVPA"
BASE COUNT 813 a 405 c 486 g 404 t
ORIGIN
1 cctgtggccc aagtcccgca ggggctgaca ccaacagcac ccccagtaga tccggcagcg
61 gacctactgg agaaatacat gcagcaaggg aggaagcaga gagagcagag acagagacca
121 tacaaagagg tgacagagga cttactacac ctcgagcagg aagaaacacc atgcagagag
181 acgacagagg atttgctgca cctcaattct ctctttggaa aagaccagta gtcacagcac
241 taattgaggg tcagccagta gaagttctac tggacacagg ggctgacgac tcaatagtag
301 caggggtaga attagggagc aattatagtc caaagatagt agggggaata gggggattca
361 taaataccaa ggaatacaaa aatgtagaga taaaagtact gaataagaga gtaagggcca
421 ccataatgac aggtgagacc ccaatcaaca tttttggcag aaacattctg acagccttag
481 gcatgtcatt aaatctgcca gttgccaaga ttgaaccagt aaaagtaaca ttgaagccag
541 gaaaggatgg accaaaactg aggcaatggc ccttaaccaa agaaaaaata gaggcactaa
601 aagagatctg tgagaaaatg gagagggagg gccagctaga ggaagcatct ccaaccaatc
661 cttataatac ccccacattt gcaatcaaga aaaaggacaa aaacaaatgg agaatgctaa
721 tagattttag agaactaaac aaagtaaccc aagaattcac agaggtccag ttaggaattc
781 cacacccggc aggattagcc aaaaagagaa gaattactgt actagatgta ggggatgctt
841 acttttccat accactatat gaagatttta gacaatatac tgcatttact ctaccatcag
901 tcaacaatgc tgaaccagga aaaagataca tatataaagt cttaccacag ggatggaagg
961 gatcaccagc aatttttcag ttcacaatga ggcagatctt agaaccattt agaaaagcaa
1021 acccggatgt cattctcatc cagtacatgg atgatatttt aatagctagt gacaggacag
1081 atttagagca tgacagagta gtcctgcagt taaaagaact cctaaatggc ttaggatttt
1141 ccaccccaga tgagaagttc caaaaggacc ctccattcca atggatggga tatgaactgt
1201 ggccaactaa atggaagttg caaaaaatac agttgcccca aaaggaagta tggacagtca
1261 atgacatcca aaagttagtg ggtgtcctaa attgggcagc acaaatctac ccagggataa
1321 agaccaaaca cttgtgtagg ctaatcagag gaaaaatgac actcacagaa gaggtacagt
1381 ggacagaatt agcagaagca gagctagaag aaaacaaaat tatcttaagc caggaacaag
1441 agggatgcta ttaccaagag gaaaaagaac tagaggcaac agtccacaaa gatcaagaca
1501 atcagtggac atataaaata catcagggag agaaaattct aaaggtagga aaatatgcaa
1561 aggtaaaaaa tacccacact aacggagtca gactattagc acatgtagtc cagaaaatag
1621 gaaaagaagc actagttatt tggggacgaa taccaaaatt tcacctacca gtagaaagag
1681 agacctggga acagtggtgg gatgattact ggcaagtaac atggatccca gactgggact
1741 tcgtgtccac cccaccatta gtcaggttag catttaacct ggtaaaagat cccataccag
1801 gcgaagagac cttctacaca gatggatcct gcaataagca atcaaaagaa ggaaaagcag
1861 gatacataac agatagagga agggataaag tgaaggtgtt agagcaaacc accaatcagc
1921 aagcagaatt agaagccttt gcaatggcaa taatggactc aggtccaaga gccaacattg
1981 tagtggactc acaatatgta ataggaataa tagcaggcca accaacagag tcagagagta
2041 gaatagtaaa tcaaatcata gaagagatga taaagaaaga agcaatctat gttgcatggg
2101 tcccagcc
//
last modified: Tue May 31 10:56 2022