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LOCUS FJ812567 2111 bp RNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A05_041906_PX_4219 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812567
VERSION FJ812567.1 GI:226347548
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2111)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2111)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2111
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="H2A05_041906_PX_4219"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="19-Apr-2006"
/note="group: A"
gene <1..>2111
/gene="pol"
CDS <1..>2111
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50185.1"
/db_xref="GI:226347549"
/translation="HGPSPAGAGADGTPSRSGSGPVGEIYAAREKAEGAEGEAIQGGD
RGLTAPRAGRGAIQRGANGGLAAPQFSLWKRPVVTAYIEEQPVEVLLDTGADDSIVAG
IELGSDYTPKIVGGIGGFINTKEYKNVEIKVLNKKVRATIMTGDTPINIFGRNILTAL
GMSLNLPIAKVEPIKIMLKPGKDGPRLRQWPLSKEKIEALREICEKMEKEGQLEEAPP
TNPYNTPTFAIRKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKRKRITVLD
IGDAYFSIPLDEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPTIFQHTMRHVL
EPFRKANPDVTIIQYMDDILIASDRTNLEHDTAVLQLKELLNGLGFSTPDEKFQKDPP
YQWMGYELWPTKWKLQKLQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTRHLCKLIR
GRMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATIQKNEHNQWTYKIH
QGDNILKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQW
WDNYWQVTWIPDWDFISTPPLVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGRAGYIT
DRGRDRVRALEQTTNQQAELEAFAMAIADSGPKANIIVDSQYVMGIVAGQPTESESRI
VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT 806 a 407 c 494 g 404 t
ORIGIN
1 cccatggccc aagtcccgca ggggctggtg ccgacggcac ccccagcaga tccggcagcg
61 gacctgttgg agaaatatat gcagcaaggg agaaagctga aggagcagag ggcgaggcca
121 tacaaggagg tgacagagga cttactgcac ctcgagcagg gagaggagcc atacagagag
181 gtgccaacgg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcacag
241 catacattga ggagcagcca gtagaagtct tactagacac aggggctgat gactcaattg
301 tagcaggaat agagttaggg agtgattata ccccaaaaat agtaggggga atagggggat
361 tcataaatac taaggaatat aaaaatgtag aaataaaagt actaaataag aaagtgagag
421 ccaccataat gacaggtgac accccaatca acatttttgg tagaaacatt ctgacggcct
481 taggcatgtc attaaactta ccaattgcca aggtagaacc aataaaaata atgctgaagc
541 caggaaaaga tgggccaagg ctgaggcaat ggcccttgtc aaaagaaaaa atagaagcac
601 taagagagat ctgtgaaaaa atggaaaaag aaggccaact agaggaagca cccccaacta
661 atccctataa tacccccaca tttgccatta gaaaaaagga caagaacaaa tggagaatgc
721 taatagattt cagagaacta aacaaagtga ctcaagattt tacagaaatt cagttaggaa
781 ttccacaccc agcagggtta gccaagagga aaagaatcac agtactagat ataggagatg
841 cttacttttc cataccattg gatgaagatt tcaggaagta tactgcattt actataccat
901 cagtaaacaa tgcagaacca ggaaaaagat atatatataa agtcttacca caaggatgga
961 agggatcacc aacaattttt cagcacacaa tgaggcatgt cttagaacca ttcagaaaag
1021 caaacccaga tgtcactatc attcagtaca tggatgatat cttaatagct agtgacagaa
1081 caaacctaga acatgacacg gcagtcctac agctcaaaga actactaaat ggcctagggt
1141 tctctacccc agatgagaag ttccaaaaag accctccata tcaatggatg ggctatgagc
1201 tatggccaac taaatggaag ctgcagaaat tgcaattgcc ccaaaaagaa atatggacag
1261 tcaatgatat ccaaaaacta gtgggtgttt taaactgggc agcgcagatc tacccaggga
1321 taaagactag acatttgtgt aagttaatca gaggaagaat gacactcaca gaggaagtac
1381 agtggacaga actagcagaa gcagaactag aagagaacaa aattatcctg agtcaggaac
1441 aagaaggatg ctattatcag gaagaaaaag agttggaagc aacaatccaa aagaatgaac
1501 acaatcagtg gacatataaa atacaccagg gggataatat tctaaaagta ggaaaatacg
1561 caaaggtaaa aaatacccat accaatgggg tcagattatt agcacaggtg gttcaaaaaa
1621 tagggaagga agcactagtc atttggggac gaataccaaa atttcaccta ccagtagaaa
1681 gagatacctg ggaacagtgg tgggacaatt actggcaagt gacatggatc ccagactggg
1741 acttcatatc taccccacca ctggtcaggt tagcatttaa cctggtgaaa gatcccatac
1801 caggcgcaga gaccttctac acagatggat cctgcaatag acagtcaaaa gaagggagag
1861 caggatacat aacagataga ggaagggaca gagtaagggc attggagcag actaccaatc
1921 agcaagcaga attagaagcc tttgcaatgg caatagcaga ctcaggtcca aaagccaaca
1981 tcatagtaga ctcacagtat gtgatgggga tagtagcagg ccaaccaaca gagtcagaga
2041 gtagaatagt aaatcaaatc atagaggaaa tgataaaaaa ggaagcaatc tatgttgcat
2101 gggtcccagc c
//
last modified: Tue May 31 10:56 2022