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LOCUS	    FJ812567		    2111 bp    RNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A05_041906_PX_4219 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812567
VERSION     FJ812567.1 GI:226347548
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2111)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2111)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2111
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="H2A05_041906_PX_4219"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="19-Apr-2006"
		     /note="group: A"
     gene	     <1..>2111
		     /gene="pol"
     CDS	     <1..>2111
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50185.1"
		     /db_xref="GI:226347549"
		     /translation="HGPSPAGAGADGTPSRSGSGPVGEIYAAREKAEGAEGEAIQGGD
		     RGLTAPRAGRGAIQRGANGGLAAPQFSLWKRPVVTAYIEEQPVEVLLDTGADDSIVAG
		     IELGSDYTPKIVGGIGGFINTKEYKNVEIKVLNKKVRATIMTGDTPINIFGRNILTAL
		     GMSLNLPIAKVEPIKIMLKPGKDGPRLRQWPLSKEKIEALREICEKMEKEGQLEEAPP
		     TNPYNTPTFAIRKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKRKRITVLD
		     IGDAYFSIPLDEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPTIFQHTMRHVL
		     EPFRKANPDVTIIQYMDDILIASDRTNLEHDTAVLQLKELLNGLGFSTPDEKFQKDPP
		     YQWMGYELWPTKWKLQKLQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTRHLCKLIR
		     GRMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATIQKNEHNQWTYKIH
		     QGDNILKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQW
		     WDNYWQVTWIPDWDFISTPPLVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGRAGYIT
		     DRGRDRVRALEQTTNQQAELEAFAMAIADSGPKANIIVDSQYVMGIVAGQPTESESRI
		     VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT	806 a	 407 c	  494 g    404 t
ORIGIN
       1 cccatggccc aagtcccgca ggggctggtg ccgacggcac ccccagcaga tccggcagcg 
      61 gacctgttgg agaaatatat gcagcaaggg agaaagctga aggagcagag ggcgaggcca 
     121 tacaaggagg tgacagagga cttactgcac ctcgagcagg gagaggagcc atacagagag 
     181 gtgccaacgg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcacag 
     241 catacattga ggagcagcca gtagaagtct tactagacac aggggctgat gactcaattg 
     301 tagcaggaat agagttaggg agtgattata ccccaaaaat agtaggggga atagggggat 
     361 tcataaatac taaggaatat aaaaatgtag aaataaaagt actaaataag aaagtgagag 
     421 ccaccataat gacaggtgac accccaatca acatttttgg tagaaacatt ctgacggcct 
     481 taggcatgtc attaaactta ccaattgcca aggtagaacc aataaaaata atgctgaagc 
     541 caggaaaaga tgggccaagg ctgaggcaat ggcccttgtc aaaagaaaaa atagaagcac 
     601 taagagagat ctgtgaaaaa atggaaaaag aaggccaact agaggaagca cccccaacta 
     661 atccctataa tacccccaca tttgccatta gaaaaaagga caagaacaaa tggagaatgc 
     721 taatagattt cagagaacta aacaaagtga ctcaagattt tacagaaatt cagttaggaa 
     781 ttccacaccc agcagggtta gccaagagga aaagaatcac agtactagat ataggagatg 
     841 cttacttttc cataccattg gatgaagatt tcaggaagta tactgcattt actataccat 
     901 cagtaaacaa tgcagaacca ggaaaaagat atatatataa agtcttacca caaggatgga 
     961 agggatcacc aacaattttt cagcacacaa tgaggcatgt cttagaacca ttcagaaaag 
    1021 caaacccaga tgtcactatc attcagtaca tggatgatat cttaatagct agtgacagaa 
    1081 caaacctaga acatgacacg gcagtcctac agctcaaaga actactaaat ggcctagggt 
    1141 tctctacccc agatgagaag ttccaaaaag accctccata tcaatggatg ggctatgagc 
    1201 tatggccaac taaatggaag ctgcagaaat tgcaattgcc ccaaaaagaa atatggacag 
    1261 tcaatgatat ccaaaaacta gtgggtgttt taaactgggc agcgcagatc tacccaggga 
    1321 taaagactag acatttgtgt aagttaatca gaggaagaat gacactcaca gaggaagtac 
    1381 agtggacaga actagcagaa gcagaactag aagagaacaa aattatcctg agtcaggaac 
    1441 aagaaggatg ctattatcag gaagaaaaag agttggaagc aacaatccaa aagaatgaac 
    1501 acaatcagtg gacatataaa atacaccagg gggataatat tctaaaagta ggaaaatacg 
    1561 caaaggtaaa aaatacccat accaatgggg tcagattatt agcacaggtg gttcaaaaaa 
    1621 tagggaagga agcactagtc atttggggac gaataccaaa atttcaccta ccagtagaaa 
    1681 gagatacctg ggaacagtgg tgggacaatt actggcaagt gacatggatc ccagactggg 
    1741 acttcatatc taccccacca ctggtcaggt tagcatttaa cctggtgaaa gatcccatac 
    1801 caggcgcaga gaccttctac acagatggat cctgcaatag acagtcaaaa gaagggagag 
    1861 caggatacat aacagataga ggaagggaca gagtaagggc attggagcag actaccaatc 
    1921 agcaagcaga attagaagcc tttgcaatgg caatagcaga ctcaggtcca aaagccaaca 
    1981 tcatagtaga ctcacagtat gtgatgggga tagtagcagg ccaaccaaca gagtcagaga 
    2041 gtagaatagt aaatcaaatc atagaggaaa tgataaaaaa ggaagcaatc tatgttgcat 
    2101 gggtcccagc c
//
last modified: Tue May 31 10:56 2022


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