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LOCUS FJ812536 2111 bp RNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A02_030706_PX_4217 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812536
VERSION FJ812536.1 GI:226347486
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2111)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2111)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2111
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="H2A02_030706_PX_4217"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="07-Mar-2006"
/note="group: A"
gene <1..>2111
/gene="pol"
CDS <1..>2111
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50154.1"
/db_xref="GI:226347487"
/translation="CGPSPAGADTNSTPNRSGSGPIGEIYAAREETKRAERETIQGGD
RGLDKPQAGGDTMQGTTVRGLAAPQFSLWKRPVVLAYIEGQPVEVLLDTGADDSIVAG
IELGSNYSPKIVGGIGGFINVKEYKNAEIKVLGKKVRATIMTGDTPINIFGRNILTAL
GMSLNFPVAKIEPIKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPP
TNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKKRRITVID
IGDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPMGWKGSPAIFQHTLRQVL
EPFRRANPDVILIQYVDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPP
YQWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIR
GKTTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDEDNQWTYKIH
QEEKILKVGKYAKIKNTHTNGVRLLAQVIQKIGKEALVIWGRIPKFHLPVERDVWEQW
WDNYWQVTWIPEWDFVSTPPLVRLVFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYIT
DRGRDKVKVLEQTTNQQAELEAFAMAVTDSGPKANIIVDSQYVMGIVAGQPTESESRI
VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT 807 a 403 c 495 g 406 t
ORIGIN
1 cctgtggccc aagtcccgca ggggctgaca ccaacagcac ccccaataga tccggcagcg
61 gacctattgg agagatatat gcagcaaggg aagaaacaaa gagagcagag agagagacca
121 tacaaggagg tgacagagga cttgataaac ctcaggcagg gggagacacc atgcagggaa
181 ccaccgtgcg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcctag
241 catacattga gggtcagcca gtagaagttt tactagacac aggggctgac gactcaatag
301 tagcaggaat agagttagga agcaattata gtccaaaaat agtaggggga ataggaggat
361 tcataaatgt caaggagtat aaaaatgcag aaataaaagt gttaggtaag aaggtaagag
421 ccaccataat gacaggtgac accccaatca acatttttgg cagaaacatt ttgacagcct
481 taggcatgtc attaaatttc ccagtcgcca agatagaacc aataaaagta acattgaagc
541 caggaaaaga tggaccaaaa ctgaggcaat ggcccttaac aaaagaaaaa atagaggcac
601 taaaagagat ctgtgagaaa atggaaaaag agggccagct ggaggaagca cccccaacta
661 atccttataa tacccccaca tttgcaatta agaagaagga caaaaacaaa tggagaatgc
721 taatagattt tagagaacta aacaaggtaa ctcaagattt cacagaagtc cagttaggaa
781 ttccacaccc agcaggatta gccaagaaga gaagaattac tgtaatagat ataggggatg
841 cttacttttc tataccactg catgaagatt tcagacagta tactgcattt actttgccat
901 cagtgaacaa tgctgaacca ggaaagagat acatatacaa ggtcttgccc atgggatgga
961 agggatcacc agcaattttt cagcacacac tgaggcaagt cttagaacca ttcaggaggg
1021 caaatccaga tgtcattctc attcagtatg tagatgatat cttgatagct agtgacagga
1081 cagatttaga acatgataaa gtagtcctgc agctaaagga actcctaaat ggtctgggat
1141 tttccacccc agacgagaag ttccaaaaag accctccata ccaatggatg ggctatgaac
1201 tgtggccaac taaatggaag ctgcagaaaa tacaactgcc ccaaaaggaa gtgtggacag
1261 tcaatgacat ccaaaagctg gtgggtgtcc taaattgggc agcacaaatc tatccaggga
1321 taaagaccaa acacttatgc agattaatca gaggaaaaac aacactcaca gaggaagtac
1381 agtggacaga gttagcagaa gcagagctag aagaaaacaa aattatctta agccaggaac
1441 aagagggatg ttattaccaa gaggaaaagg agctagaggc aacagtccaa aaggatgaag
1501 acaatcagtg gacatataaa atacaccaag aggagaaaat tctaaaagta ggaaaatatg
1561 caaagataaa aaatacccac accaatggag tcaggctatt agcacaggta attcaaaaaa
1621 taggaaagga ggcactagtc atttggggaa gaataccaaa atttcaccta ccagtagaaa
1681 gagatgtctg ggaacagtgg tgggacaact attggcaagt gacatggatc ccagaatggg
1741 acttcgtgtc taccccacca ctggtcagat tagtgtttaa cctagtgaaa gatcccatac
1801 caggcgcaga aaccttctac acagatggat cctgcaatag gcagtcaaaa gaaggaaaag
1861 caggatacat aacagataga gggagagaca aggtgaaggt attagagcag accaccaatc
1921 agcaagcaga attagaagcc tttgcaatgg cagtgacaga ctcaggtcca aaagccaata
1981 ttatagtaga ctcacaatac gtaatgggaa tagtagcagg ccaaccaaca gaatcagaga
2041 gtagaatagt aaatcaaatc atagaagaaa tgatcaaaaa ggaggcaatc tatgttgcat
2101 gggttccagc c
//
last modified: Tue May 31 10:56 2022