HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ812536		    2111 bp    RNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A02_030706_PX_4217 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812536
VERSION     FJ812536.1 GI:226347486
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2111)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2111)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2111
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="H2A02_030706_PX_4217"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="07-Mar-2006"
		     /note="group: A"
     gene	     <1..>2111
		     /gene="pol"
     CDS	     <1..>2111
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50154.1"
		     /db_xref="GI:226347487"
		     /translation="CGPSPAGADTNSTPNRSGSGPIGEIYAAREETKRAERETIQGGD
		     RGLDKPQAGGDTMQGTTVRGLAAPQFSLWKRPVVLAYIEGQPVEVLLDTGADDSIVAG
		     IELGSNYSPKIVGGIGGFINVKEYKNAEIKVLGKKVRATIMTGDTPINIFGRNILTAL
		     GMSLNFPVAKIEPIKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPP
		     TNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKKRRITVID
		     IGDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPMGWKGSPAIFQHTLRQVL
		     EPFRRANPDVILIQYVDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPP
		     YQWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIR
		     GKTTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDEDNQWTYKIH
		     QEEKILKVGKYAKIKNTHTNGVRLLAQVIQKIGKEALVIWGRIPKFHLPVERDVWEQW
		     WDNYWQVTWIPEWDFVSTPPLVRLVFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYIT
		     DRGRDKVKVLEQTTNQQAELEAFAMAVTDSGPKANIIVDSQYVMGIVAGQPTESESRI
		     VNQIIEEMIKKEAIYVAWVPA"
BASE COUNT	807 a	 403 c	  495 g    406 t
ORIGIN
       1 cctgtggccc aagtcccgca ggggctgaca ccaacagcac ccccaataga tccggcagcg 
      61 gacctattgg agagatatat gcagcaaggg aagaaacaaa gagagcagag agagagacca 
     121 tacaaggagg tgacagagga cttgataaac ctcaggcagg gggagacacc atgcagggaa 
     181 ccaccgtgcg aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcctag 
     241 catacattga gggtcagcca gtagaagttt tactagacac aggggctgac gactcaatag 
     301 tagcaggaat agagttagga agcaattata gtccaaaaat agtaggggga ataggaggat 
     361 tcataaatgt caaggagtat aaaaatgcag aaataaaagt gttaggtaag aaggtaagag 
     421 ccaccataat gacaggtgac accccaatca acatttttgg cagaaacatt ttgacagcct 
     481 taggcatgtc attaaatttc ccagtcgcca agatagaacc aataaaagta acattgaagc 
     541 caggaaaaga tggaccaaaa ctgaggcaat ggcccttaac aaaagaaaaa atagaggcac 
     601 taaaagagat ctgtgagaaa atggaaaaag agggccagct ggaggaagca cccccaacta 
     661 atccttataa tacccccaca tttgcaatta agaagaagga caaaaacaaa tggagaatgc 
     721 taatagattt tagagaacta aacaaggtaa ctcaagattt cacagaagtc cagttaggaa 
     781 ttccacaccc agcaggatta gccaagaaga gaagaattac tgtaatagat ataggggatg 
     841 cttacttttc tataccactg catgaagatt tcagacagta tactgcattt actttgccat 
     901 cagtgaacaa tgctgaacca ggaaagagat acatatacaa ggtcttgccc atgggatgga 
     961 agggatcacc agcaattttt cagcacacac tgaggcaagt cttagaacca ttcaggaggg 
    1021 caaatccaga tgtcattctc attcagtatg tagatgatat cttgatagct agtgacagga 
    1081 cagatttaga acatgataaa gtagtcctgc agctaaagga actcctaaat ggtctgggat 
    1141 tttccacccc agacgagaag ttccaaaaag accctccata ccaatggatg ggctatgaac 
    1201 tgtggccaac taaatggaag ctgcagaaaa tacaactgcc ccaaaaggaa gtgtggacag 
    1261 tcaatgacat ccaaaagctg gtgggtgtcc taaattgggc agcacaaatc tatccaggga 
    1321 taaagaccaa acacttatgc agattaatca gaggaaaaac aacactcaca gaggaagtac 
    1381 agtggacaga gttagcagaa gcagagctag aagaaaacaa aattatctta agccaggaac 
    1441 aagagggatg ttattaccaa gaggaaaagg agctagaggc aacagtccaa aaggatgaag 
    1501 acaatcagtg gacatataaa atacaccaag aggagaaaat tctaaaagta ggaaaatatg 
    1561 caaagataaa aaatacccac accaatggag tcaggctatt agcacaggta attcaaaaaa 
    1621 taggaaagga ggcactagtc atttggggaa gaataccaaa atttcaccta ccagtagaaa 
    1681 gagatgtctg ggaacagtgg tgggacaact attggcaagt gacatggatc ccagaatggg 
    1741 acttcgtgtc taccccacca ctggtcagat tagtgtttaa cctagtgaaa gatcccatac 
    1801 caggcgcaga aaccttctac acagatggat cctgcaatag gcagtcaaaa gaaggaaaag 
    1861 caggatacat aacagataga gggagagaca aggtgaaggt attagagcag accaccaatc 
    1921 agcaagcaga attagaagcc tttgcaatgg cagtgacaga ctcaggtcca aaagccaata 
    1981 ttatagtaga ctcacaatac gtaatgggaa tagtagcagg ccaaccaaca gaatcagaga 
    2041 gtagaatagt aaatcaaatc atagaagaaa tgatcaaaaa ggaggcaatc tatgttgcat 
    2101 gggttccagc c
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.