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LOCUS FJ812530 2108 bp RNA linear VRL 03-APR-2009
DEFINITION HIV-2 isolate H2A01_122905_PX_59 from Senegal pol protein (pol)
gene, partial cds
ACCESSION FJ812530
VERSION FJ812530.1 GI:226347474
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2108)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
Kiviat,N.B. and Sow,P.S.
TITLE Emergence of multiclass drug-resistance in HIV-2 in
antiretroviral-treated individuals in senegal: implications for
HIV-2 treatment in resouce-limited West Africa.
JOURNAL Clin. Infect. Dis.. 48(4); 476-83 (2009)
PUBMED 19143530
REFERENCE 2 (bases 1 to 2108)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S.
TITLE Direct Submission
JOURNAL Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
University of Washington, Box 358070, Rosen Building #320, Seattle,
WA 98195, USA
FEATURES Location/Qualifiers
source 1..2108
/organism="Human immunodeficiency virus 2"
/mol_type="genomic RNA"
/isolate="H2A01_122905_PX_59"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Senegal"
/collection_date="29-Dec-2005"
/note="group: A"
gene <1..>2108
/gene="pol"
CDS <1..>2108
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="ACO50148.1"
/db_xref="GI:226347475"
/translation="CGPGPTGANTNSTPSGSSNRPTGEVHAARERAERAETETIQRGD
RGPNTTLAGRDTMQRDDGGLAAPQFSLWKRPVVIAHIEGQPVEVLLDTGADDSIVAGI
ELGNDYSPKIVGGIGGFINTKEYKNVEIKVLNKKVKATIMTGDTPINIFGRNILATLG
MSLNLPVAKIEPIKVTLKPGKDGPKLRQWPLTREKIEALKEICEKMEREGQLEEAPPT
NPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDV
GDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYMMRQILE
PFRKANPDVILIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPF
QWMGYELWPTKWKLQRIQLPQKDVWTVNDIQKLVGVLNWAAQLYQGIKTRHLCKLIRG
KMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQ
EDKVLKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQWW
DNYWQVTWIPDWDFISTPPLVRLAFNLVKEPILGAETFYTDGSCNRQSKEGKAGYITD
RGRDKVRVLEQTTNQQAELEAFAMALTDSGPKANIIVDSQYVMGIVAGQPTESESKIV
NQIIEEMIKKEAIYVAWVPA"
BASE COUNT 815 a 418 c 482 g 393 t
ORIGIN
1 cctgtggccc aggtcccaca ggggctaaca ccaacagcac ccccagtgga tccagcaaca
61 gacctactgg agaggtacat gcagcaaggg agagagcaga gagagcagag acagagacca
121 tacagagagg tgacagagga cctaatacaa ctctggcagg gagagacacc atgcagagag
181 acgacggagg actcgctgca cctcaattct ctctttggaa aagaccagta gtcatagcac
241 atattgaggg ccagccagta gaagtcttgc tagacacagg ggctgacgac tcaatagtag
301 caggaataga gttagggaat gactatagcc caaagatagt agggggaata gggggattca
361 taaataccaa ggaatacaaa aatgtagaaa taaaagtact aaataagaag gtaaaagcta
421 ccataatgac aggtgatacc ccaatcaaca tttttggcag aaacattttg gcgaccttgg
481 gcatgtcatt aaatctacca gtcgccaaga tagaaccaat aaaggtaaca ttgaagccag
541 gaaaggatgg accaaaactg aggcaatggc ccttaaccag agaaaagata gaggcactaa
601 aagaaatctg tgaaaaaatg gaaagagagg gccagctaga ggaagcacct ccaactaatc
661 cttataatac ccccacattt gcaatcaaga agaaggacaa aaacaaatgg agaatgctaa
721 tagattttag agaactaaac aaggtaactc aagatttcac agaaatccag ttaggaattc
781 cacacccagc aggattagcc aagaagagaa gaattactgt actagatgta ggggatgctt
841 acttttccat acccctacac gaagatttta ggcagtatac tgcatttacc ttaccatcag
901 taaacaatgc tgaaccaggg aaaagatata tatataaagt cttaccacag gggtggaagg
961 gatcaccagc aatttttcag tacatgatga ggcagatcct agaaccattc agaaaagcaa
1021 acccagatgt cattctcatt cagtacatgg atgatatctt aatagctagc gacaggacag
1081 atttagaaca tgacagagtg gtcctgcagc taaaagaact tctaaatggc ctgggatttt
1141 ccaccccaga tgagaagttc caaaaagacc ctccattcca gtggatggga tatgagttgt
1201 ggccaaccaa atggaaattg caacggatac aattacccca gaaagacgta tggacagtca
1261 atgacatcca aaagctagtg ggtgtcctaa attgggcagc acaactctac caaggaataa
1321 aaaccaggca cttatgtaaa ttgatcagag gaaaaatgac actcacagaa gaagtgcaat
1381 ggacagaatt agcagaagca gagctagaag aaaacaaaat tatcttaagc caggaacaag
1441 aaggatgcta ttaccaagag gaaaaggagc tagaggcaac agtccaaaag gatcaagaca
1501 accagtggac ctataaaata caccaggaag acaaggttct aaaagtagga aaatatgcaa
1561 aggtaaaaaa tacccacacc aacggagtca gactattagc acaggtagtc caaaaaatag
1621 ggaaagaagc attagtcata tggggacgaa taccaaaatt tcacctacca gtagagagag
1681 atacctggga acagtggtgg gataactact ggcaagtgac atggatccca gactgggact
1741 tcatatctac cccaccgctg gtcaggttag catttaacct ggtaaaagaa cccatactag
1801 gtgcagaaac cttctacaca gatggatcct gcaataggca atcaaaagaa ggaaaagcag
1861 gatacataac agatagagga agagacaagg tgagggtatt agagcaaacc accaatcagc
1921 aagcagaact agaagccttt gcgatggcat taacagactc aggtccaaaa gccaacatta
1981 tagtagactc acaatatgta atgggaatag tagcaggcca accaacagag tcagaaagta
2041 aaatagtaaa tcaaatcata gaagaaatga taaaaaagga agcaatctat gttgcatggg
2101 tcccagcc
//
last modified: Tue May 31 10:56 2022