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LOCUS	    FJ812530		    2108 bp    RNA     linear	VRL 03-APR-2009
DEFINITION  HIV-2 isolate H2A01_122905_PX_59 from Senegal pol protein (pol)
	    gene, partial cds
ACCESSION   FJ812530
VERSION     FJ812530.1 GI:226347474
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2108)
            Show all sequences for reference 1
  AUTHORS   Gottlieb,G.S., Badiane,N.M.D., Hawes,S.E., Fortes,L., Toure,M.,
	    Ndour,C.T., Starling,A.K., Traore,F., Sall,F., Wong,K.G.,
	    Cherne,S.L., Anderson,D.J., Dye,S.A., Smith,R.A., Mullins,J.I.,
	    Kiviat,N.B. and Sow,P.S.
  TITLE     Emergence of multiclass drug-resistance in HIV-2 in
	    antiretroviral-treated individuals in senegal: implications for
	    HIV-2 treatment in resouce-limited West Africa.
  JOURNAL   Clin. Infect. Dis.. 48(4); 476-83 (2009)
  PUBMED    19143530
REFERENCE   2 (bases 1 to 2108)
            Show all sequences for reference 2
  AUTHORS   Gottlieb,G.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2009) Medicine/Allergy and Infectious Diseases,
	    University of Washington, Box 358070, Rosen Building #320, Seattle,
	    WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..2108
		     /organism="Human immunodeficiency virus 2"
		     /mol_type="genomic RNA"
		     /isolate="H2A01_122905_PX_59"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Senegal"
		     /collection_date="29-Dec-2005"
		     /note="group: A"
     gene	     <1..>2108
		     /gene="pol"
     CDS	     <1..>2108
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO50148.1"
		     /db_xref="GI:226347475"
		     /translation="CGPGPTGANTNSTPSGSSNRPTGEVHAARERAERAETETIQRGD
		     RGPNTTLAGRDTMQRDDGGLAAPQFSLWKRPVVIAHIEGQPVEVLLDTGADDSIVAGI
		     ELGNDYSPKIVGGIGGFINTKEYKNVEIKVLNKKVKATIMTGDTPINIFGRNILATLG
		     MSLNLPVAKIEPIKVTLKPGKDGPKLRQWPLTREKIEALKEICEKMEREGQLEEAPPT
		     NPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDV
		     GDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYMMRQILE
		     PFRKANPDVILIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPF
		     QWMGYELWPTKWKLQRIQLPQKDVWTVNDIQKLVGVLNWAAQLYQGIKTRHLCKLIRG
		     KMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQ
		     EDKVLKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQWW
		     DNYWQVTWIPDWDFISTPPLVRLAFNLVKEPILGAETFYTDGSCNRQSKEGKAGYITD
		     RGRDKVRVLEQTTNQQAELEAFAMALTDSGPKANIIVDSQYVMGIVAGQPTESESKIV
		     NQIIEEMIKKEAIYVAWVPA"
BASE COUNT	815 a	 418 c	  482 g    393 t
ORIGIN
       1 cctgtggccc aggtcccaca ggggctaaca ccaacagcac ccccagtgga tccagcaaca 
      61 gacctactgg agaggtacat gcagcaaggg agagagcaga gagagcagag acagagacca 
     121 tacagagagg tgacagagga cctaatacaa ctctggcagg gagagacacc atgcagagag 
     181 acgacggagg actcgctgca cctcaattct ctctttggaa aagaccagta gtcatagcac 
     241 atattgaggg ccagccagta gaagtcttgc tagacacagg ggctgacgac tcaatagtag 
     301 caggaataga gttagggaat gactatagcc caaagatagt agggggaata gggggattca 
     361 taaataccaa ggaatacaaa aatgtagaaa taaaagtact aaataagaag gtaaaagcta 
     421 ccataatgac aggtgatacc ccaatcaaca tttttggcag aaacattttg gcgaccttgg 
     481 gcatgtcatt aaatctacca gtcgccaaga tagaaccaat aaaggtaaca ttgaagccag 
     541 gaaaggatgg accaaaactg aggcaatggc ccttaaccag agaaaagata gaggcactaa 
     601 aagaaatctg tgaaaaaatg gaaagagagg gccagctaga ggaagcacct ccaactaatc 
     661 cttataatac ccccacattt gcaatcaaga agaaggacaa aaacaaatgg agaatgctaa 
     721 tagattttag agaactaaac aaggtaactc aagatttcac agaaatccag ttaggaattc 
     781 cacacccagc aggattagcc aagaagagaa gaattactgt actagatgta ggggatgctt 
     841 acttttccat acccctacac gaagatttta ggcagtatac tgcatttacc ttaccatcag 
     901 taaacaatgc tgaaccaggg aaaagatata tatataaagt cttaccacag gggtggaagg 
     961 gatcaccagc aatttttcag tacatgatga ggcagatcct agaaccattc agaaaagcaa 
    1021 acccagatgt cattctcatt cagtacatgg atgatatctt aatagctagc gacaggacag 
    1081 atttagaaca tgacagagtg gtcctgcagc taaaagaact tctaaatggc ctgggatttt 
    1141 ccaccccaga tgagaagttc caaaaagacc ctccattcca gtggatggga tatgagttgt 
    1201 ggccaaccaa atggaaattg caacggatac aattacccca gaaagacgta tggacagtca 
    1261 atgacatcca aaagctagtg ggtgtcctaa attgggcagc acaactctac caaggaataa 
    1321 aaaccaggca cttatgtaaa ttgatcagag gaaaaatgac actcacagaa gaagtgcaat 
    1381 ggacagaatt agcagaagca gagctagaag aaaacaaaat tatcttaagc caggaacaag 
    1441 aaggatgcta ttaccaagag gaaaaggagc tagaggcaac agtccaaaag gatcaagaca 
    1501 accagtggac ctataaaata caccaggaag acaaggttct aaaagtagga aaatatgcaa 
    1561 aggtaaaaaa tacccacacc aacggagtca gactattagc acaggtagtc caaaaaatag 
    1621 ggaaagaagc attagtcata tggggacgaa taccaaaatt tcacctacca gtagagagag 
    1681 atacctggga acagtggtgg gataactact ggcaagtgac atggatccca gactgggact 
    1741 tcatatctac cccaccgctg gtcaggttag catttaacct ggtaaaagaa cccatactag 
    1801 gtgcagaaac cttctacaca gatggatcct gcaataggca atcaaaagaa ggaaaagcag 
    1861 gatacataac agatagagga agagacaagg tgagggtatt agagcaaacc accaatcagc 
    1921 aagcagaact agaagccttt gcgatggcat taacagactc aggtccaaaa gccaacatta 
    1981 tagtagactc acaatatgta atgggaatag tagcaggcca accaacagag tcagaaagta 
    2041 aaatagtaaa tcaaatcata gaagaaatga taaaaaagga agcaatctat gttgcatggg 
    2101 tcccagcc
//
last modified: Tue May 31 10:56 2022


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