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LOCUS	    FJ800420		    1058 bp    DNA     linear	VRL 01-APR-2009
DEFINITION  HIV-1 isolate HN-TR48 from Honduras pol protein (pol) gene, partial
	    cds
ACCESSION   FJ800420
VERSION     FJ800420.1 GI:225729335
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1058)
            Show all sequences for reference 1
  AUTHORS   Murillo,W., de Rivera,I.L., Parham,L., Jovel,E., Palou,E.,
	    Karlsson,A.C. and Albert,J.
  TITLE     Prevalence of drug resistance and importance of viral load
	    measurements in Honduran HIV-infected patients failing
	    antiretroviral treatment.
  JOURNAL   HIV. Med.. 11(2); 95-103 (2010)
  PUBMED    19686436
REFERENCE   2 (bases 1 to 1058)
            Show all sequences for reference 2
  AUTHORS   Murillo,W., Lorenzana de Rivera,I., Parham,L., Jovel,E., Palou,E.,
	    Karlsson,A.C. and Albert,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2009) Departamento de Microbiologia, Universidad
	    Nacional Autonoma de Honduras, Boul Suyapa, Ciudad Universitaria,
	    Edificio CB, 4to Piso, Tegucigalpa, Francisco Morazan, Honduras
FEATURES             Location/Qualifiers
     source	     1..1058
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="HN-TR48"
		     /isolation_source="heterosexual human"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Honduras"
		     /collection_date="09-Feb-2006"
     gene	     <1..>1058
		     /gene="pol"
     CDS	     <1..>1058
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO24611.1"
		     /db_xref="GI:225729336"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHRAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALLEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKBSTXWRKLXDXRELNKRTQDFWEVQLGIPHPAGLXKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKXNPD
		     IVIYQYXDDLYXSSDLEIGQHRXKIEELRQHLLRWGLXTPDXKHQKEPPFLWMGYELH
		     PXKWTVQPIELPEKESWTV"
BASE COUNT	410 a	 178 c	  209 g    239 t     22 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctttat tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaratctg tggacataga gctataggta cagtattagt aggacccaca 
     241 cctgtcaaca taattggaag aaacttgttg actcagcttg gttgcacytt aaattttccc 
     301 ataagtccta ttgaaactgt accagtaaaa ctaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattrt tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaaracag tactaratgg agaaaattak tagatytcag ggaacttaat 
     541 aaragaactc aagacttctg ggaagttcaa ttaggaatac cacaycccgc agggttaraa 
     601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttya ggaagtatac tgcattcacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatctt agagcctttt agaaaaraaa atccagacat agttatctat 
     841 caatacrtgg atgatttgta trtaagytct gacttagaaa taggrcagca tagaabaaaa 
     901 atagaggaac tgagacaaca tctgttgagg tggggactta ycacaccaga craaaaacac 
     961 cagaaagaac ctccatttct ttggatgggr tatgaactcc aycccgawaa atggacagta 
    1021 cagcctatag agctaccaga aaaagaaagc tggactgt
//
last modified: Tue May 31 10:56 2022


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