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LOCUS FJ800420 1058 bp DNA linear VRL 01-APR-2009
DEFINITION HIV-1 isolate HN-TR48 from Honduras pol protein (pol) gene, partial
cds
ACCESSION FJ800420
VERSION FJ800420.1 GI:225729335
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1058)
Show all sequences for reference 1
AUTHORS Murillo,W., de Rivera,I.L., Parham,L., Jovel,E., Palou,E.,
Karlsson,A.C. and Albert,J.
TITLE Prevalence of drug resistance and importance of viral load
measurements in Honduran HIV-infected patients failing
antiretroviral treatment.
JOURNAL HIV. Med.. 11(2); 95-103 (2010)
PUBMED 19686436
REFERENCE 2 (bases 1 to 1058)
Show all sequences for reference 2
AUTHORS Murillo,W., Lorenzana de Rivera,I., Parham,L., Jovel,E., Palou,E.,
Karlsson,A.C. and Albert,J.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2009) Departamento de Microbiologia, Universidad
Nacional Autonoma de Honduras, Boul Suyapa, Ciudad Universitaria,
Edificio CB, 4to Piso, Tegucigalpa, Francisco Morazan, Honduras
FEATURES Location/Qualifiers
source 1..1058
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="HN-TR48"
/isolation_source="heterosexual human"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Honduras"
/collection_date="09-Feb-2006"
gene <1..>1058
/gene="pol"
CDS <1..>1058
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO24611.1"
/db_xref="GI:225729336"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQIPIEICGHRAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALLEICTEMEKEGKISKIGPENPYNTPVF
AIKKKBSTXWRKLXDXRELNKRTQDFWEVQLGIPHPAGLXKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKXNPD
IVIYQYXDDLYXSSDLEIGQHRXKIEELRQHLLRWGLXTPDXKHQKEPPFLWMGYELH
PXKWTVQPIELPEKESWTV"
BASE COUNT 410 a 178 c 209 g 239 t 22 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctttat tagacacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaratctg tggacataga gctataggta cagtattagt aggacccaca
241 cctgtcaaca taattggaag aaacttgttg actcagcttg gttgcacytt aaattttccc
301 ataagtccta ttgaaactgt accagtaaaa ctaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattrt tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaaracag tactaratgg agaaaattak tagatytcag ggaacttaat
541 aaragaactc aagacttctg ggaagttcaa ttaggaatac cacaycccgc agggttaraa
601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttya ggaagtatac tgcattcacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatctt agagcctttt agaaaaraaa atccagacat agttatctat
841 caatacrtgg atgatttgta trtaagytct gacttagaaa taggrcagca tagaabaaaa
901 atagaggaac tgagacaaca tctgttgagg tggggactta ycacaccaga craaaaacac
961 cagaaagaac ctccatttct ttggatgggr tatgaactcc aycccgawaa atggacagta
1021 cagcctatag agctaccaga aaaagaaagc tggactgt
//
last modified: Tue May 31 10:56 2022