HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ798355		    3379 bp    DNA     linear	VRL 21-APR-2009
DEFINITION  HIV-1 isolate 101_TP1_39 from USA envelope glycoprotein (env) gene,
	    complete cds; vpu pseudogene, partial sequence; rev protein (rev)
	    and tat protein (tat) genes, partial cds; and nef protein (nef)
	    gene, complete cds
ACCESSION   FJ798355
VERSION     FJ798355.1 GI:226914770
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 3379)
            Show all sequences for reference 1
  AUTHORS   Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
	    Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
	    Swanstrom,R.I.
  TITLE     Major coexisting human immunodeficiency virus type 1 env gene
	    subpopulations in the peripheral blood are produced by cells with
	    similar turnover rates and show little evidence of genetic
	    compartmentalization
  JOURNAL   J. Virol. 83 (9), 4068-4080 (2009)
  PUBMED    19211740
REFERENCE   2 (bases 1 to 3379)
            Show all sequences for reference 2
  AUTHORS   Ince,W.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2009) Lineberger Cancer Center, University of
	    North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## DBID 1090867878 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..3379
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="101_TP1_39"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: B"
     gene	     1..2607
		     /gene="env"
     CDS	     1..2607
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACO90665.1"
		     /db_xref="GI:226914773"
		     /translation="MKVKGIRRNYQRLWTWGTLLLGMLMIYSAGEQLWVTVYYGVPVW
		     KEATTTLFCASDTKAYHTEVHNVWATHACVPTDPSPQEVVLGNVTENFNMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLSNLNNVTNNHNNSNSGEDLKGEIGEI
		     KNCSFNVTTIIKDKIQKEYALFYKSDVIPIDTDNNSTSNYTSYRLIHCNTSVITQACP
		     KVSFEPIPIHFCAPAGFAILKCNNKTFTGQGPCTNVSTVQCTHGIRPVVSTQLLLNGS
		     LAEKEVVIRTENFTDNAKTIIVHLNESVTINCTRPNNNTRKGIHIGPGRAFYATGQII
		     GDIRQAHCTLNITQWNNTLNQIVTKLRKNFNLENKTIIFNHSSGGDPEIIMHSFNCAG
		     EFFYCNTTQLFNSTWRANGSWTGTKGNDNGTVTLPCRIKQIINMWQQVGKAMYAPPIA
		     GKITCNSSITGILLTRDGGNTNNTNNTETFRPGGGDMRDNWRSELYKYKVVKIQPLGI
		     APTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNN
		     LLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNT
		     SWSNKSLNDIWDNMTWMQWEKEIDNYTGLIYSLIEESQNQQEKNEQDLLALDKWASLW
		     NWFDITRWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPTQRGPD
		     RPGGIEEEGGERDRDTSRPLVDGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRTVELLG
		     RRGWEALKYWWNLLQYWGQELKKSAVNLLNAIAIAVAEGTDRVIEIVQRAVRIILNIP
		     TRIRQGLEIALL"
     gene	     <1..71
		     /gene="vpu"
		     /pseudo="vpu"
     CDS	     <1..71
		     /gene="vpu"
		     /pseudo="vpu"
		     /codon_start="1"
		     /transl_table="1"
     gene	     <2191..2474
		     /gene="rev"
     CDS	     <2191..2474
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACO90664.1"
		     /db_xref="GI:226914772"
		     /translation="PPPNPEGTRQARRNRRRRWRERQRHIQAVSGWILSNHLGRPAEP
		     VPLQLPPLERLTLDCNEDCGTPGTQGVGSPQVLVESPPVLGSGTKEECC"
     gene	     <2191..2281
		     /gene="tat"
     CDS	     <2191..2281
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACO90663.1"
		     /db_xref="GI:226914771"
		     /translation="PASQPRGDPTGPEESKKKVERETETHPGR"
     gene	     2609..3229
		     /gene="nef"
     CDS	     2609..3229
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACO90666.1"
		     /db_xref="GI:226914774"
		     /translation="MGGKWSKPKMPGWSTIRERMRQAEPAADGVGAASRDLERHGAIT
		     SSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYAAAVNLSHFLRKQGGLEGLVW
		     SQRRQDILDLWVHHTQGFFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEVEEANQGE
		     NNILLHPASLHGIEDPEKEVLVWRFDSRLAFDHVAKTLHPEYYQNC"
BASE COUNT     1147 a	 633 c	  804 g    795 t
ORIGIN
       1 atgaaagtga aggggatcag gaggaattat cagcgcttat ggacatgggg caccttgctc 
      61 cttgggatgt taatgatcta tagtgctgga gaacaattgt gggtaacagt ctattatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatac taaagcatat 
     181 catacagagg tacataatgt ttgggccaca cacgcctgtg tacccacaga ccccagccca 
     241 caagaagtag tattgggaaa tgtaacagaa aattttaaca tgtggaaaaa taacatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaaa 
     361 ttaaccccac tctgtgttac cttaaattgc actgataatt tgagcaattt gaacaatgtt 
     421 actaataatc ataacaatag taatagcggg gaagatctga aaggagaaat aggagaaata 
     481 aaaaactgtt ctttcaatgt caccacaatc ataaaggata agatacagaa agaatatgca 
     541 cttttttata aatctgatgt aataccaata gatactgata ataatagtac tagtaactat 
     601 actagctata ggttgataca ttgtaacacc tcagtcatta cacaagcctg tccaaaggta 
     661 tcctttgaac caattcccat acatttttgc gccccggctg gttttgcgat tctaaaatgt 
     721 aacaataaga cattcacagg acaagggcca tgcacaaatg tcagtacagt acaatgtaca 
     781 catggaatta ggccagtggt atcaactcaa ctgctgttaa atggtagtct agcagagaaa 
     841 gaggtagtaa tcagaactga aaatttcaca gacaatgcta aaaccataat agtacacctg 
     901 aatgaatctg taaccattaa ttgtacaaga cccaacaaca atacaaggaa aggtatacat 
     961 ataggaccag ggagagcatt ttatgcaaca ggacaaataa taggagatat aagacaagca 
    1021 cattgtactc ttaatataac acaatggaat aacactttaa atcaaatagt tacaaaatta 
    1081 agaaaaaatt ttaatttgga aaataaaaca ataatcttta atcactcctc aggaggggac 
    1141 ccagaaatca taatgcacag ttttaattgt gcaggagaat ttttctactg taatacaaca 
    1201 caattgttta atagtacttg gagggctaat ggtagttgga ctggaactaa aggaaatgat 
    1261 aatggcacag tcacacttcc atgcagaata aaacaaatta taaacatgtg gcaacaagta 
    1321 ggaaaagcaa tgtatgcccc tcccattgca ggaaagatta catgtaactc aagtattaca 
    1381 ggaatactat taacaagaga tggaggtaat actaacaata ctaacaacac cgagaccttc 
    1441 agacctggag gaggagatat gagggacaat tggagaagtg aattatataa atataaagta 
    1501 gtaaaaattc aaccattagg aatagcaccc accaaggcaa aaagaagagt ggtgcagaga 
    1561 gaaaaaagag cagtgggatt aggagctatg ttccttgggt tcttgggagc agcaggaagc 
    1621 actatgggcg cagcgtcaat aacgctgacg gtacaagcca gacaattatt gtctggtata 
    1681 gtgcaacagc agaacaactt gctgagggct attgaggcgc aacagcatct gttgcaactc 
    1741 acagtctggg gcatcaagca gctccaggca agagtcctgg ctgtggaaag atacctgaag 
    1801 gatcaacagc tcctgggaat ttggggttgc tctggaaaac tcatttgcac cactactgtg 
    1861 ccttggaata ctagttggag taataaatct ctgaatgaca tttgggacaa catgacctgg 
    1921 atgcagtggg aaaaagaaat tgacaattac acaggcttaa tatactcctt aattgaggaa 
    1981 tcgcaaaacc aacaagaaaa gaatgaacaa gacttattgg cattagataa atgggcgagt 
    2041 ttgtggaatt ggtttgacat aacaagatgg ctgtggtata taaaaatatt cataatgata 
    2101 gtagggggct taataggatt aagaatagtt tttactgtac tttctatagt aaatagagtt 
    2161 aggcagggct actcaccatt atcatttcag acccgcctcc caacccagag gggacccgac 
    2221 aggcccggag gaatcgaaga agaaggtgga gagagagaca gagacacatc caggccgtta 
    2281 gtggatggat tcttagcaat catctgggtc gacctgcgga gcctgtgcct cttcagctac 
    2341 caccgcttga gagacttact cttgattgta acgaggactg tggaactcct gggacgcagg 
    2401 gggtgggaag ccctcaagta ttggtggaat ctcctccagt attggggtca ggaactaaag 
    2461 aagagtgctg ttaacttgct caacgccata gccatagcag tagctgaggg gacagatagg 
    2521 gttatagaaa tagtacagag agctgttaga attattctca acatacctac acgaataaga 
    2581 cagggcttgg aaattgcctt gctataagat gggtggcaag tggtcaaaac ctaaaatgcc 
    2641 agggtggtct actataaggg aaagaatgag acaagctgag ccagcagcag atggggtagg 
    2701 agcagcatct cgagatctag aaagacatgg agcaataaca agtagcaaca cagcagcaac 
    2761 taatgctgat tgtgcctggc tggaagcgca agaggaggag gaggtgggtt ttccagtcag 
    2821 acctcaggta cctttaagac caatgactta tgcagcagct gtcaatctta gccacttttt 
    2881 aagaaaacag gggggactgg aagggctagt ttggtcccaa agaagacaag atatccttga 
    2941 tctatgggtc caccacacac aaggcttctt ccctgactgg cagaactaca caccagggcc 
    3001 agggactaga tatcccctga cctttggatg gtgcttcaag ctagtaccag ttgagccaga 
    3061 ggaggtagaa gaagccaatc aaggagagaa caacatcttg ttacaccctg caagcctgca 
    3121 tgggatagag gatccagaga aagaagtgtt agtgtggaga tttgacagcc gcctagcatt 
    3181 tgatcacgtg gccaaaacgc tgcatccgga gtactaccag aactgctgac atcgagcttt 
    3241 ctacaaggga ctttccgctg gggactttcc agggaggtgt ggctgggcgg gactggggag 
    3301 tggcgagccc tcagaagctg catataagca gccgctttct gcttgtactg ggtctctcga 
    3361 gttagaccag atctgagcc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.