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LOCUS FJ798355 3379 bp DNA linear VRL 21-APR-2009
DEFINITION HIV-1 isolate 101_TP1_39 from USA envelope glycoprotein (env) gene,
complete cds; vpu pseudogene, partial sequence; rev protein (rev)
and tat protein (tat) genes, partial cds; and nef protein (nef)
gene, complete cds
ACCESSION FJ798355
VERSION FJ798355.1 GI:226914770
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 3379)
Show all sequences for reference 1
AUTHORS Ince,W.L., Harrington,P.R., Schnell,G.L., Patel-Chhabra,M.,
Burch,C.L., Menezes,P., Price,R.W., Eron,J.J. Jr.. and
Swanstrom,R.I.
TITLE Major coexisting human immunodeficiency virus type 1 env gene
subpopulations in the peripheral blood are produced by cells with
similar turnover rates and show little evidence of genetic
compartmentalization
JOURNAL J. Virol. 83 (9), 4068-4080 (2009)
PUBMED 19211740
REFERENCE 2 (bases 1 to 3379)
Show all sequences for reference 2
AUTHORS Ince,W.L.
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2009) Lineberger Cancer Center, University of
North Carolina, 450 West Dr, Chapel Hill, NC 27599, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## DBID 1090867878 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..3379
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="101_TP1_39"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene 1..2607
/gene="env"
CDS 1..2607
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACO90665.1"
/db_xref="GI:226914773"
/translation="MKVKGIRRNYQRLWTWGTLLLGMLMIYSAGEQLWVTVYYGVPVW
KEATTTLFCASDTKAYHTEVHNVWATHACVPTDPSPQEVVLGNVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLSNLNNVTNNHNNSNSGEDLKGEIGEI
KNCSFNVTTIIKDKIQKEYALFYKSDVIPIDTDNNSTSNYTSYRLIHCNTSVITQACP
KVSFEPIPIHFCAPAGFAILKCNNKTFTGQGPCTNVSTVQCTHGIRPVVSTQLLLNGS
LAEKEVVIRTENFTDNAKTIIVHLNESVTINCTRPNNNTRKGIHIGPGRAFYATGQII
GDIRQAHCTLNITQWNNTLNQIVTKLRKNFNLENKTIIFNHSSGGDPEIIMHSFNCAG
EFFYCNTTQLFNSTWRANGSWTGTKGNDNGTVTLPCRIKQIINMWQQVGKAMYAPPIA
GKITCNSSITGILLTRDGGNTNNTNNTETFRPGGGDMRDNWRSELYKYKVVKIQPLGI
APTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNN
LLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNT
SWSNKSLNDIWDNMTWMQWEKEIDNYTGLIYSLIEESQNQQEKNEQDLLALDKWASLW
NWFDITRWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPTQRGPD
RPGGIEEEGGERDRDTSRPLVDGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRTVELLG
RRGWEALKYWWNLLQYWGQELKKSAVNLLNAIAIAVAEGTDRVIEIVQRAVRIILNIP
TRIRQGLEIALL"
gene <1..71
/gene="vpu"
/pseudo="vpu"
CDS <1..71
/gene="vpu"
/pseudo="vpu"
/codon_start="1"
/transl_table="1"
gene <2191..2474
/gene="rev"
CDS <2191..2474
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ACO90664.1"
/db_xref="GI:226914772"
/translation="PPPNPEGTRQARRNRRRRWRERQRHIQAVSGWILSNHLGRPAEP
VPLQLPPLERLTLDCNEDCGTPGTQGVGSPQVLVESPPVLGSGTKEECC"
gene <2191..2281
/gene="tat"
CDS <2191..2281
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ACO90663.1"
/db_xref="GI:226914771"
/translation="PASQPRGDPTGPEESKKKVERETETHPGR"
gene 2609..3229
/gene="nef"
CDS 2609..3229
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ACO90666.1"
/db_xref="GI:226914774"
/translation="MGGKWSKPKMPGWSTIRERMRQAEPAADGVGAASRDLERHGAIT
SSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYAAAVNLSHFLRKQGGLEGLVW
SQRRQDILDLWVHHTQGFFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEVEEANQGE
NNILLHPASLHGIEDPEKEVLVWRFDSRLAFDHVAKTLHPEYYQNC"
BASE COUNT 1147 a 633 c 804 g 795 t
ORIGIN
1 atgaaagtga aggggatcag gaggaattat cagcgcttat ggacatgggg caccttgctc
61 cttgggatgt taatgatcta tagtgctgga gaacaattgt gggtaacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatac taaagcatat
181 catacagagg tacataatgt ttgggccaca cacgcctgtg tacccacaga ccccagccca
241 caagaagtag tattgggaaa tgtaacagaa aattttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaaa
361 ttaaccccac tctgtgttac cttaaattgc actgataatt tgagcaattt gaacaatgtt
421 actaataatc ataacaatag taatagcggg gaagatctga aaggagaaat aggagaaata
481 aaaaactgtt ctttcaatgt caccacaatc ataaaggata agatacagaa agaatatgca
541 cttttttata aatctgatgt aataccaata gatactgata ataatagtac tagtaactat
601 actagctata ggttgataca ttgtaacacc tcagtcatta cacaagcctg tccaaaggta
661 tcctttgaac caattcccat acatttttgc gccccggctg gttttgcgat tctaaaatgt
721 aacaataaga cattcacagg acaagggcca tgcacaaatg tcagtacagt acaatgtaca
781 catggaatta ggccagtggt atcaactcaa ctgctgttaa atggtagtct agcagagaaa
841 gaggtagtaa tcagaactga aaatttcaca gacaatgcta aaaccataat agtacacctg
901 aatgaatctg taaccattaa ttgtacaaga cccaacaaca atacaaggaa aggtatacat
961 ataggaccag ggagagcatt ttatgcaaca ggacaaataa taggagatat aagacaagca
1021 cattgtactc ttaatataac acaatggaat aacactttaa atcaaatagt tacaaaatta
1081 agaaaaaatt ttaatttgga aaataaaaca ataatcttta atcactcctc aggaggggac
1141 ccagaaatca taatgcacag ttttaattgt gcaggagaat ttttctactg taatacaaca
1201 caattgttta atagtacttg gagggctaat ggtagttgga ctggaactaa aggaaatgat
1261 aatggcacag tcacacttcc atgcagaata aaacaaatta taaacatgtg gcaacaagta
1321 ggaaaagcaa tgtatgcccc tcccattgca ggaaagatta catgtaactc aagtattaca
1381 ggaatactat taacaagaga tggaggtaat actaacaata ctaacaacac cgagaccttc
1441 agacctggag gaggagatat gagggacaat tggagaagtg aattatataa atataaagta
1501 gtaaaaattc aaccattagg aatagcaccc accaaggcaa aaagaagagt ggtgcagaga
1561 gaaaaaagag cagtgggatt aggagctatg ttccttgggt tcttgggagc agcaggaagc
1621 actatgggcg cagcgtcaat aacgctgacg gtacaagcca gacaattatt gtctggtata
1681 gtgcaacagc agaacaactt gctgagggct attgaggcgc aacagcatct gttgcaactc
1741 acagtctggg gcatcaagca gctccaggca agagtcctgg ctgtggaaag atacctgaag
1801 gatcaacagc tcctgggaat ttggggttgc tctggaaaac tcatttgcac cactactgtg
1861 ccttggaata ctagttggag taataaatct ctgaatgaca tttgggacaa catgacctgg
1921 atgcagtggg aaaaagaaat tgacaattac acaggcttaa tatactcctt aattgaggaa
1981 tcgcaaaacc aacaagaaaa gaatgaacaa gacttattgg cattagataa atgggcgagt
2041 ttgtggaatt ggtttgacat aacaagatgg ctgtggtata taaaaatatt cataatgata
2101 gtagggggct taataggatt aagaatagtt tttactgtac tttctatagt aaatagagtt
2161 aggcagggct actcaccatt atcatttcag acccgcctcc caacccagag gggacccgac
2221 aggcccggag gaatcgaaga agaaggtgga gagagagaca gagacacatc caggccgtta
2281 gtggatggat tcttagcaat catctgggtc gacctgcgga gcctgtgcct cttcagctac
2341 caccgcttga gagacttact cttgattgta acgaggactg tggaactcct gggacgcagg
2401 gggtgggaag ccctcaagta ttggtggaat ctcctccagt attggggtca ggaactaaag
2461 aagagtgctg ttaacttgct caacgccata gccatagcag tagctgaggg gacagatagg
2521 gttatagaaa tagtacagag agctgttaga attattctca acatacctac acgaataaga
2581 cagggcttgg aaattgcctt gctataagat gggtggcaag tggtcaaaac ctaaaatgcc
2641 agggtggtct actataaggg aaagaatgag acaagctgag ccagcagcag atggggtagg
2701 agcagcatct cgagatctag aaagacatgg agcaataaca agtagcaaca cagcagcaac
2761 taatgctgat tgtgcctggc tggaagcgca agaggaggag gaggtgggtt ttccagtcag
2821 acctcaggta cctttaagac caatgactta tgcagcagct gtcaatctta gccacttttt
2881 aagaaaacag gggggactgg aagggctagt ttggtcccaa agaagacaag atatccttga
2941 tctatgggtc caccacacac aaggcttctt ccctgactgg cagaactaca caccagggcc
3001 agggactaga tatcccctga cctttggatg gtgcttcaag ctagtaccag ttgagccaga
3061 ggaggtagaa gaagccaatc aaggagagaa caacatcttg ttacaccctg caagcctgca
3121 tgggatagag gatccagaga aagaagtgtt agtgtggaga tttgacagcc gcctagcatt
3181 tgatcacgtg gccaaaacgc tgcatccgga gtactaccag aactgctgac atcgagcttt
3241 ctacaaggga ctttccgctg gggactttcc agggaggtgt ggctgggcgg gactggggag
3301 tggcgagccc tcagaagctg catataagca gccgctttct gcttgtactg ggtctctcga
3361 gttagaccag atctgagcc
//
last modified: Tue May 31 10:56 2022