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LOCUS FJ752417 1696 bp RNA linear VRL 16-MAR-2009
DEFINITION HIV-1 isolate GZ0801 from China pol protein (pol) gene, partial cds
ACCESSION FJ752417
VERSION FJ752417.1 GI:224830790
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1696)
Show all sequences for reference 1
AUTHORS Han,Z., Leung,T.W.C., Zhao,J., Wang,M., Fan,L., Li,K., Pang,X.,
Liang,Z., Lim,W.W.L. and Xu,H.
TITLE A HIV-1 heterosexual transmission chain in Guangzhou, China: a
molecular epidemiological study.
JOURNAL Virol J. 2009 Sep 25;6:148.
PUBMED 19778458
REFERENCE 2 (bases 1 to 1696)
Show all sequences for reference 2
AUTHORS Han,Z., Leung,T.W.C., Wang,M., Fan,L., Li,K., Pang,X., Liang,Z.,
Lim,W., Zhao,J. and Xu,H.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2009) Division for AIDS Control and Prevention,
Guangzhou Center for Disease Control and Prevention, Zhongshan San
Road 23, Guangzhou, Guangdong 510080, China
FEATURES Location/Qualifiers
source 1..1696
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GZ0801"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="21-Jan-2008"
/note="genotype: CRF01_AE"
gene <1..>1696
/gene="pol"
CDS <1..>1696
/gene="pol"
/note="contains protease; gag-pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACN66488.1"
/db_xref="GI:224830791"
/translation="RRLGDGGGESLCTEAGAERQGTSSSLNFPQITLWQRPLVTVKIG
GQLKEALLDTGADDTVLEDINLPGKWKPKMIGGIGGFIKVRQYDQIQIEICGKKAIGT
VLVGPTPVNIIGRNMLTQIGCTLNFPISPIDTVPVTLKPGMDGPKVKQWPLTEEKIKA
LTEICKEMEEEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQ
LGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVL
PQGWKGSPAIFQSSMTKILEPYKIKNPEMVIYQYMDDLYVGSDLEIGQHRIKIEELRA
HLLSWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKDHWTVNDIQKLVGKLN
WASQIYPGIKIKQLCKLLRGAKALTDIIPLTEEAELELAENREILKTPVHGVYYDPSK
DLVAEVQKQGQDQWTYQIYQEPYKNLKTGKYARKRSAHTNDVRQLAEVVQKIATESIV
IWGKTPKFKLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIMGAE"
BASE COUNT 667 a 290 c 369 g 370 t
ORIGIN
1 agaagactgg gggatggggg aggagagagc ctctgcactg aagcaggagc agaaagacaa
61 ggaacctcct cctccctcaa tttccctcaa atcactcttt ggcaacgacc ccttgtcaca
121 gtaaaaatag gaggacagct aaaagaagct ctgttagata caggagcaga tgatacagta
181 ttagaagata taaatttgcc aggaaaatgg aaaccaaaaa tgataggggg aattggaggt
241 tttatcaaag taaggcaata tgatcagata cagatagaaa tttgtggcaa aaaggctata
301 ggtacagtat tagtaggacc tacacctgtc aacataattg gacgaaacat gttgactcag
361 attggttgta ctttaaattt cccaattagt cctattgaca ctgtaccagt aacattaaaa
421 ccaggaatgg atggaccaaa ggttaaacag tggccattga cagaagaaaa aataaaagca
481 ttaacagaaa tttgtaagga gatggaagag gaaggaaaaa tctcaaaaat tgggcctgaa
541 aatccataca atactccagt atttgctata aagaaaaagg acagcaccaa atggaggaaa
601 ttagtagatt ttagagagct caataaaaga actcaggact tttgggaagt tcaattagga
661 ataccacatc cagcaggttt aaaaaagaaa aaatcagtaa cagtactaga tgtgggagat
721 gcatattttt cagttccttt agatgagagc tttagaaagt atactgcatt caccatacct
781 agtataaaca atgagacacc aggaatcaga tatcagtaca atgtgctgcc acagggatgg
841 aaaggatcac cagcaatatt ccagagtagc atgacaaaaa tcttagagcc ctataaaata
901 aaaaatccag aaatggttat ctatcaatac atggatgact tgtatgtagg atctgattta
961 gaaatagggc aacacagaat aaaaatagag gagctaagag cccatctgtt gagctgggga
1021 tttactacac cagacaaaaa gcatcagaag gaacctccat tcctttggat gggatatgaa
1081 ctccatcctg acaaatggac agtccagcct atagaactgc cagaaaaaga ccactggact
1141 gtcaatgata tacagaagtt agtgggaaaa ctaaattggg caagccaaat ttatccagga
1201 attaagataa agcaactgtg taaactcctc aggggagcta aagcactaac agacataata
1261 ccactgactg aagaagcaga attagagttg gcagagaaca gggaaattct aaaaactcca
1321 gtgcatggag tatattatga cccatcaaaa gacttagtag cagaagtaca aaaacaaggg
1381 caggaccaat ggacatatca aatatatcaa gagccatata aaaatctaaa gacaggaaag
1441 tatgccagaa aaaggtctgc tcacactaat gatgtaagac aattggcaga agtggtgcaa
1501 aaaatagcca cagaaagcat agtaatatgg ggaaagaccc ctaaatttaa actacccata
1561 caaagagaaa catgggaaac atggtggacg gagtattggc aggctacctg gattcctgaa
1621 tgggaatttg ttaatactcc tcctctagta aaattgtggt accaattaga aaaagacccc
1681 ataatgggag cagaga
//
last modified: Tue May 31 10:56 2022