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LOCUS	    FJ578103		    2734 bp    DNA     linear	VRL 14-MAY-2009
DEFINITION  Simian immunodeficiency virus isolate AK9F.PK.C10 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; envelope glycoprotein (env) gene, complete cds; and nef
	    protein (nef) gene, partial cds
ACCESSION   FJ578103
VERSION     FJ578103.1 GI:229831167
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2734)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Li,H., Learn,G.H., Hraber,P., Giorgi,E.E., Grayson,T.,
	    Sun,C., Chen,Y., Yeh,W.W., Letvin,N.L., Mascola,J.R., Nabel,G.J.,
	    Haynes,B.F., Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H.
	    and Shaw,G.M.
  TITLE     Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or
	    SIVmac251 recapitulates human mucosal infection by HIV-1
  JOURNAL   J. Exp. Med. 206 (5), 1117-1134 (2009)
  PUBMED    19414559
REFERENCE   2 (bases 1 to 2734)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Li,H., Learn,G.H., Giorgi,E.E., Grayson,T., Sun,C.,
	    Hraber,P.T., Yeh,W., Letvin,N.L., Nabel,G.J., Haynes,B.F.,
	    Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2008) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL840b, Birmingham,
	    AL 35294-0024, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code AK9F Sequence name
	    AK9F.PK.C10 Sample date 12-9-04 Viral load 140795 Species SMM
	    Sample tissue plasma Inoculum name SIVsmmE660 Amplification
	    strategy SGA Infection route Intrarectal Dose 6000012 virions DBID
	    2343562850 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2734
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="AK9F.PK.C10"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="12-Sep-2004"
     gene	     1..2535
		     /gene="rev"
     CDS	     join(1..64,2297..2535)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACQ85924.1"
		     /db_xref="GI:229831168"
		     /translation="MSSTEEELRKRLRLIHFLHQTNPYPQGPGTANQRRRRRRRWRQR
		     WQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPGPPTSTPEPLNDVAKSP"
     gene	     <1..2393
		     /gene="tat"
     CDS	     join(<1..64,2297..2393)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACQ85925.1"
		     /db_xref="GI:229831169"
		     /translation="EQHRRRTPKKTKANPLPASNKSLSTRARNRQPKKEKKEKVETEV
		     ATDLGLGR"
     gene	     71..2734
		     /gene="env"
     CDS	     71..2734
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACQ85926.1"
		     /db_xref="GI:229831170"
		     /translation="MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWKNATIPLFC
		     TTRNRDTWGTTQCLPDNDDYSELAISITEAFDAWNNTVTEQAIEDVWNLFETSIKPCV
		     KLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTTTTAATPSVAENVINESNPCIKNNN
		     CAGLEQEPMIGCKFNMTGLKRDKKIEYNETWYSRDLICEQSANESESKCYMHHCNTSV
		     IQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTST
		     WFGFNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCRRPGNKTVLPVTIMSGLVFH
		     SQPINERPKQAWCWFGGSWKEAIQEVKETLVKHPRYTGTNDTKKINLTAPAGGDPEVT
		     FMWTNCRGEFLYCKMNWFLNWVEDRDQKSSRWRQQNTRERQKKNYVPCHIRQIINTWH
		     KVGKNVYLPPREGDLTCNSTVTSLIAEIDWTNNNETNITMSAEVAELYRLELGDYKLV
		     EITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLL
		     AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQV
		     CHTTVPWPNETLVPNWSNMTWQEWERQVDFLEANITQLLEEAQIQQEKNMYELQKLNS
		     WDIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYV
		     QQIPIHKGQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDW
		     LLRIYQVLQPVLQSLSTTSQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASA
		     WRDIWETLGRVGRGILAIPRRVRQGLELTLL"
     gene	     2568..>2734
		     /gene="nef"
     CDS	     2568..>2734
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACQ85927.1"
		     /db_xref="GI:229831171"
		     /translation="MGGVISKKQCRRGGNLRERLLQARGETYGRLWEGLEEGYSQSLG
		     ASGKGLSSLSC"
BASE COUNT	898 a	 501 c	  667 g    668 t
ORIGIN
       1 atgagcagca ccgaagaaga actccgaaaa agactaaggc taatccactt cctgcatcaa 
      61 acaagtaagt atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc 
     121 tttagagatt tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaagaa 
     181 tgcgacaatt cccctcttct gtacaaccag gaatagggac acttggggaa caacacaatg 
     241 cttgccagat aatgatgatt actcagaatt ggcaatcagt atcacagagg cttttgatgc 
     301 ttggaataat acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc 
     361 cattaagccc tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga 
     421 gacagatagg tggggtttga caaggaacgc agggacaaca acaacaacaa caacaacaac 
     481 aacagcagca acaccaagtg tggcagaaaa tgttataaat gaaagtaatc cttgcataaa 
     541 aaataataat tgtgcaggct tggaacagga gcccatgata ggttgtaaat ttaacatgac 
     601 agggttaaaa agggacaaaa agatagaata taatgaaaca tggtattcaa gagatttaat 
     661 ctgtgagcag tcagcgaatg aaagtgagag taaatgttac atgcatcatt gtaacaccag 
     721 tgttattcag gaatcctgtg acaagcatta ttgggatgct attagattta gatattgtgc 
     781 accgccaggt tatgctttgc ttaggtgtaa tgattcaaat tattcaggct ttgctcctaa 
     841 ctgttctaag gtagtggttt cttcatgcac aagaatgatg gaaacgcaaa cctctacttg 
     901 gtttggcttc aatggtacta gggcagaaaa tagaacatac atttattggc atggcaaaag 
     961 taatagaacc ataattagct taaataagta ttataatcta acaatgagat gtagaagacc 
    1021 aggaaataag acagttttac cagtcaccat tatgtcaggg ttggtcttcc attcgcaacc 
    1081 cataaatgag agaccaaaac aggcctggtg ctggtttgga ggaagctgga aagaggccat 
    1141 ccaggaagtg aaggaaacct tggtcaaaca tcccaggtat acgggaacta atgatactaa 
    1201 gaaaattaat ctaacagctc cagcaggagg agatccagaa gtcactttta tgtggacaaa 
    1261 ttgtagagga gaattcttat actgcaaaat gaattggttt cttaattggg tagaggacag 
    1321 agaccaaaag agtagcagat ggagacaaca aaatacgaga gagcgacaga agaaaaatta 
    1381 tgtgccatgt catattagac aaataatcaa cacgtggcac aaagtaggca aaaatgtata 
    1441 tttgcctcct agggaaggag acctgacatg taattccact gtaactagtc tcatagcaga 
    1501 gatagattgg accaataaca atgagaccaa tatcaccatg agtgcagagg tggcagaact 
    1561 gtatcgattg gagttgggag attacaaatt agtagagatt actccaattg gcttggcccc 
    1621 cacaagtgta agaaggtaca ccacaactgg tgcctcaaga aataagagag gggtctttgt 
    1681 gctagggttc ttgggttttc tcgcgacagc aggttctgca atgggcgcgg cgtcgctgac 
    1741 gctgtcggct cagtcccgga ctttgttggc tgggatagtg cagcaacagc aacagctgtt 
    1801 ggatgtggtc aagagacaac aagaattgtt gcgactgacc gtctggggaa ctaagaacct 
    1861 ccagactaga gtcactgcta tcgagaagta cctgaaggat caggcgcagc taaattcatg 
    1921 gggatgtgct tttaggcaag tctgtcacac tactgtacca tggccaaatg aaacattggt 
    1981 gcctaattgg agcaatatga cttggcaaga gtgggaaaga caggttgact tcctagaggc 
    2041 aaatataact caattattag aagaagcaca aattcagcaa gaaaagaata tgtatgaatt 
    2101 gcaaaaacta aatagctggg atatctttgg caattggttt gaccttactt cttggataag 
    2161 atatatacaa tatggtgtac taatagtttt aggagtagta gggttaagaa tagtaatata 
    2221 tgtagtgcag atgttagcta ggttaagaca gggttatagg ccagtgttct cttcccctcc 
    2281 cgcttatgtt cagcagatcc ctatccacaa gggccaggaa ccgccaacca aagaaggaga 
    2341 agaaggagaa ggtggagaca gaggtggcaa cagatcttgg ccttggcaga tagaatatat 
    2401 tcatttccta atccgccaac tgatacgcct cttgacttgg ctattcagca gctgcaggga 
    2461 ttggctattg aggatctacc aggtcctcca accagtactc cagagcctct caacgacgtc 
    2521 gcaaagagtc cgtgaagtca tcagaattgg aatagcctac ctacaatatg ggtggcgtta 
    2581 tttccaagaa gcagtgcagg cgtggtggaa atttgcgcga gagactcttg caagcgcgtg 
    2641 gagagacata tgggagactc tgggaagggt tggaagaggg atactcgcaa tccctaggcg 
    2701 cgtcaggcaa gggcttgagc tcactctctt gtga
//
last modified: Tue May 31 10:56 2022


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