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LOCUS FJ578103 2734 bp DNA linear VRL 14-MAY-2009
DEFINITION Simian immunodeficiency virus isolate AK9F.PK.C10 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; envelope glycoprotein (env) gene, complete cds; and nef
protein (nef) gene, partial cds
ACCESSION FJ578103
VERSION FJ578103.1 GI:229831167
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2734)
Show all sequences for reference 1
AUTHORS Keele,B.F., Li,H., Learn,G.H., Hraber,P., Giorgi,E.E., Grayson,T.,
Sun,C., Chen,Y., Yeh,W.W., Letvin,N.L., Mascola,J.R., Nabel,G.J.,
Haynes,B.F., Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H.
and Shaw,G.M.
TITLE Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or
SIVmac251 recapitulates human mucosal infection by HIV-1
JOURNAL J. Exp. Med. 206 (5), 1117-1134 (2009)
PUBMED 19414559
REFERENCE 2 (bases 1 to 2734)
Show all sequences for reference 2
AUTHORS Keele,B.F., Li,H., Learn,G.H., Giorgi,E.E., Grayson,T., Sun,C.,
Hraber,P.T., Yeh,W., Letvin,N.L., Nabel,G.J., Haynes,B.F.,
Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H. and
Shaw,G.M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2008) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL840b, Birmingham,
AL 35294-0024, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code AK9F Sequence name
AK9F.PK.C10 Sample date 12-9-04 Viral load 140795 Species SMM
Sample tissue plasma Inoculum name SIVsmmE660 Amplification
strategy SGA Infection route Intrarectal Dose 6000012 virions DBID
2343562850 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2734
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="AK9F.PK.C10"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="12-Sep-2004"
gene 1..2535
/gene="rev"
CDS join(1..64,2297..2535)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ACQ85924.1"
/db_xref="GI:229831168"
/translation="MSSTEEELRKRLRLIHFLHQTNPYPQGPGTANQRRRRRRRWRQR
WQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPGPPTSTPEPLNDVAKSP"
gene <1..2393
/gene="tat"
CDS join(<1..64,2297..2393)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="ACQ85925.1"
/db_xref="GI:229831169"
/translation="EQHRRRTPKKTKANPLPASNKSLSTRARNRQPKKEKKEKVETEV
ATDLGLGR"
gene 71..2734
/gene="env"
CDS 71..2734
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACQ85926.1"
/db_xref="GI:229831170"
/translation="MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWKNATIPLFC
TTRNRDTWGTTQCLPDNDDYSELAISITEAFDAWNNTVTEQAIEDVWNLFETSIKPCV
KLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTTTTAATPSVAENVINESNPCIKNNN
CAGLEQEPMIGCKFNMTGLKRDKKIEYNETWYSRDLICEQSANESESKCYMHHCNTSV
IQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTST
WFGFNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCRRPGNKTVLPVTIMSGLVFH
SQPINERPKQAWCWFGGSWKEAIQEVKETLVKHPRYTGTNDTKKINLTAPAGGDPEVT
FMWTNCRGEFLYCKMNWFLNWVEDRDQKSSRWRQQNTRERQKKNYVPCHIRQIINTWH
KVGKNVYLPPREGDLTCNSTVTSLIAEIDWTNNNETNITMSAEVAELYRLELGDYKLV
EITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLL
AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQV
CHTTVPWPNETLVPNWSNMTWQEWERQVDFLEANITQLLEEAQIQQEKNMYELQKLNS
WDIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYV
QQIPIHKGQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDW
LLRIYQVLQPVLQSLSTTSQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASA
WRDIWETLGRVGRGILAIPRRVRQGLELTLL"
gene 2568..>2734
/gene="nef"
CDS 2568..>2734
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ACQ85927.1"
/db_xref="GI:229831171"
/translation="MGGVISKKQCRRGGNLRERLLQARGETYGRLWEGLEEGYSQSLG
ASGKGLSSLSC"
BASE COUNT 898 a 501 c 667 g 668 t
ORIGIN
1 atgagcagca ccgaagaaga actccgaaaa agactaaggc taatccactt cctgcatcaa
61 acaagtaagt atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc
121 tttagagatt tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaagaa
181 tgcgacaatt cccctcttct gtacaaccag gaatagggac acttggggaa caacacaatg
241 cttgccagat aatgatgatt actcagaatt ggcaatcagt atcacagagg cttttgatgc
301 ttggaataat acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc
361 cattaagccc tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga
421 gacagatagg tggggtttga caaggaacgc agggacaaca acaacaacaa caacaacaac
481 aacagcagca acaccaagtg tggcagaaaa tgttataaat gaaagtaatc cttgcataaa
541 aaataataat tgtgcaggct tggaacagga gcccatgata ggttgtaaat ttaacatgac
601 agggttaaaa agggacaaaa agatagaata taatgaaaca tggtattcaa gagatttaat
661 ctgtgagcag tcagcgaatg aaagtgagag taaatgttac atgcatcatt gtaacaccag
721 tgttattcag gaatcctgtg acaagcatta ttgggatgct attagattta gatattgtgc
781 accgccaggt tatgctttgc ttaggtgtaa tgattcaaat tattcaggct ttgctcctaa
841 ctgttctaag gtagtggttt cttcatgcac aagaatgatg gaaacgcaaa cctctacttg
901 gtttggcttc aatggtacta gggcagaaaa tagaacatac atttattggc atggcaaaag
961 taatagaacc ataattagct taaataagta ttataatcta acaatgagat gtagaagacc
1021 aggaaataag acagttttac cagtcaccat tatgtcaggg ttggtcttcc attcgcaacc
1081 cataaatgag agaccaaaac aggcctggtg ctggtttgga ggaagctgga aagaggccat
1141 ccaggaagtg aaggaaacct tggtcaaaca tcccaggtat acgggaacta atgatactaa
1201 gaaaattaat ctaacagctc cagcaggagg agatccagaa gtcactttta tgtggacaaa
1261 ttgtagagga gaattcttat actgcaaaat gaattggttt cttaattggg tagaggacag
1321 agaccaaaag agtagcagat ggagacaaca aaatacgaga gagcgacaga agaaaaatta
1381 tgtgccatgt catattagac aaataatcaa cacgtggcac aaagtaggca aaaatgtata
1441 tttgcctcct agggaaggag acctgacatg taattccact gtaactagtc tcatagcaga
1501 gatagattgg accaataaca atgagaccaa tatcaccatg agtgcagagg tggcagaact
1561 gtatcgattg gagttgggag attacaaatt agtagagatt actccaattg gcttggcccc
1621 cacaagtgta agaaggtaca ccacaactgg tgcctcaaga aataagagag gggtctttgt
1681 gctagggttc ttgggttttc tcgcgacagc aggttctgca atgggcgcgg cgtcgctgac
1741 gctgtcggct cagtcccgga ctttgttggc tgggatagtg cagcaacagc aacagctgtt
1801 ggatgtggtc aagagacaac aagaattgtt gcgactgacc gtctggggaa ctaagaacct
1861 ccagactaga gtcactgcta tcgagaagta cctgaaggat caggcgcagc taaattcatg
1921 gggatgtgct tttaggcaag tctgtcacac tactgtacca tggccaaatg aaacattggt
1981 gcctaattgg agcaatatga cttggcaaga gtgggaaaga caggttgact tcctagaggc
2041 aaatataact caattattag aagaagcaca aattcagcaa gaaaagaata tgtatgaatt
2101 gcaaaaacta aatagctggg atatctttgg caattggttt gaccttactt cttggataag
2161 atatatacaa tatggtgtac taatagtttt aggagtagta gggttaagaa tagtaatata
2221 tgtagtgcag atgttagcta ggttaagaca gggttatagg ccagtgttct cttcccctcc
2281 cgcttatgtt cagcagatcc ctatccacaa gggccaggaa ccgccaacca aagaaggaga
2341 agaaggagaa ggtggagaca gaggtggcaa cagatcttgg ccttggcaga tagaatatat
2401 tcatttccta atccgccaac tgatacgcct cttgacttgg ctattcagca gctgcaggga
2461 ttggctattg aggatctacc aggtcctcca accagtactc cagagcctct caacgacgtc
2521 gcaaagagtc cgtgaagtca tcagaattgg aatagcctac ctacaatatg ggtggcgtta
2581 tttccaagaa gcagtgcagg cgtggtggaa atttgcgcga gagactcttg caagcgcgtg
2641 gagagacata tgggagactc tgggaagggt tggaagaggg atactcgcaa tccctaggcg
2701 cgtcaggcaa gggcttgagc tcactctctt gtga
//
last modified: Tue May 31 10:56 2022