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LOCUS FJ578093 2730 bp DNA linear VRL 14-MAY-2009
DEFINITION Simian immunodeficiency virus isolate AK9F.PK.A2 from USA rev
protein (rev) gene, complete cds; tat protein (tat) gene, partial
cds; env pseudogene, complete sequence; and nef protein (nef) gene,
partial cds
ACCESSION FJ578093
VERSION FJ578093.1 GI:229831118
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2730)
Show all sequences for reference 1
AUTHORS Keele,B.F., Li,H., Learn,G.H., Hraber,P., Giorgi,E.E., Grayson,T.,
Sun,C., Chen,Y., Yeh,W.W., Letvin,N.L., Mascola,J.R., Nabel,G.J.,
Haynes,B.F., Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H.
and Shaw,G.M.
TITLE Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or
SIVmac251 recapitulates human mucosal infection by HIV-1
JOURNAL J. Exp. Med. 206 (5), 1117-1134 (2009)
PUBMED 19414559
REFERENCE 2 (bases 1 to 2730)
Show all sequences for reference 2
AUTHORS Keele,B.F., Li,H., Learn,G.H., Giorgi,E.E., Grayson,T., Sun,C.,
Hraber,P.T., Yeh,W., Letvin,N.L., Nabel,G.J., Haynes,B.F.,
Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H. and
Shaw,G.M.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2008) Department of Medicine, University of
Alabama at Birmingham, 720 20th Street South, KAUL840b, Birmingham,
AL 35294-0024, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code AK9F Sequence name
AK9F.PK.A2 Sample date 12-9-04 Viral load 140795 Species SMM Sample
tissue plasma Inoculum name SIVsmmE660 Amplification strategy SGA
Infection route Intrarectal Dose 6000002 virions DBID 2039532199
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2730
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="AK9F.PK.A2"
/host="Macaca mulatta"
/db_xref="taxon:11723"
/country="USA"
/collection_date="12-Sep-2004"
gene 1..2531
/gene="rev"
CDS join(1..64,2293..2531)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="ACQ85885.1"
/db_xref="GI:229831119"
/translation="MSSTEEELRKRLRLIHFLHQTNPYPQGPGTANQRRRRRRRWRQR
WQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPGPPTSTPEPLNDVAKSP"
gene <1..2389
/gene="tat"
CDS join(<1..64,2293..2389)
/gene="tat"
/codon_start="3"
/transl_table="1"
/product="tat protein"
/protein_id="ACQ85886.1"
/db_xref="GI:229831120"
/translation="EQHRRRTPKKTKANPLPASNKSLSTRARNRQPKKEKKEKVETEV
ATDLGLGR"
gene 71..2730
/gene="env"
/pseudo="env"
CDS 71..2730
/gene="env"
/pseudo="env"
/codon_start="1"
/transl_table="1"
gene 2564..>2730
/gene="nef"
CDS 2564..>2730
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ACQ85887.1"
/db_xref="GI:229831121"
/translation="MGGVISKKQCRRGGNLRERLLQARGETYGRLWEGLEEGYSQSLG
ASGKGLSSLSC"
BASE COUNT 892 a 498 c 670 g 670 t
ORIGIN
1 atgagcagca ccgaagaaga actccgaaaa agactaaggc taatccactt cctgcatcaa
61 acaagtaagt atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc
121 tttagagatt tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaagaa
181 tgcgacaatt cccctcttct gtacaaccag gaatagggac acttggggaa caacacaatg
241 cttgccagat aatgatgatt actcagaatt ggcaatcagt atcacagagg cttttgatgc
301 ttggaataat acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc
361 cattaagccc tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga
421 gacagatagg tggggtttga caaggaacgc agggacaaca acaaaatcag caacaacaac
481 aacagtagca ccaagtgtag cagaaaatgt tataaatgaa agtaatcctt gcataaaaat
541 aatagttgtg caggcttgga acaggagccc atgataggtt gtaaatttaa catgacaggg
601 ttaaaaaggg acaaaaggat agaatataat gaaacatggt attcaagaga tttaatctgt
661 gagcagtcag caaatgaaag tgagagtaaa tgttacatgc atcattgtaa caccagtgtt
721 attcaggaat cctgtgacaa gcattattgg gatgctatta gatttagata ttgtgcaccg
781 ccaggttatg ctttgcttag gtgtaatgat tcaaattatt caggctttgc tcctaactgt
841 tctaaggtag tggtttcttc atgcacaaga atgatggaaa cgcaaacctc tacttggttt
901 ggcttcaatg gtactagggc agaaaataga acatacattt attggcatgg caaaagtaat
961 agaaccataa ttagcttaaa taagtattat aatctaacaa tgagatgtag aagaccagga
1021 aataagacag ttttaccagt caccattatg tcagggttgg tcttccattc gcagcccata
1081 aatgagagac caaaacaggc ctggtgctgg tttggaggaa gctggaaaga ggccatccag
1141 gaagtgaagg aaaccttggt caaacatccc aggtatacgg gaactaatga tactaggaaa
1201 attaatctaa cagctccagc aggaggagat ccagaagtca cttttatgtg gacaaattgt
1261 agaggagaat tcttatactg caaaatgaat tggtttctta attgggtaga ggacagagac
1321 caaaagagta gcagatggag acaacaaaat acgagagagc gacagaagaa aaattatgtg
1381 ccatgtcata ttagacaaat aatcaacacg tggcacaaag taggcaaaaa tgtatatttg
1441 cctcctaggg aaggagacct gacatgtaat tccactgtaa ctagtctcat agcagagata
1501 gattggacca ataacaatga gaccaatatc accatgagtg cagaggtggc agaactgtat
1561 cgattggagt tgggagatta caaattagta gagattactc caattggctt ggcccccaca
1621 agtgtaagaa ggtacaccac aactggtgcc tcaagaaata agagaggggt ctttgtgcta
1681 gggttcttgg gttttctcgc gacagcaggt tctgcaatgg gcgcggcgtc gctgacgctg
1741 tcggctcagt cccggacttt gttggctggg atagtgcagc aacagcaaca gctgttggat
1801 gtggtcaaga gacaacaaga attgttgcga ctgaccgtct ggggaactaa gaacctccag
1861 actagagtca ctgctatcga gaagtacctg aaggatcagg cgcagctaaa ttcatgggga
1921 tgtgctttta ggcaagtctg tcacactact gtaccatggc caaatgaaac attggtgcct
1981 aattggagca atatgacttg gcaagagtgg gaaagacagg ttgacttcct agaggcaaat
2041 ataactcaat tattagaaga agcacaaatt cagcaagaaa agaatatgta tgaattgcaa
2101 aaactaaata gctgggatat ctttggcaat tggtttgacc ttacttcttg gataagatat
2161 atacaatatg gtgtactaat agttttagga gtagtagggt taagaatagt aatatatgta
2221 gtgcagatgt tagctaggtt aagacagggt tataggccag tgttctcttc ccctcccgct
2281 tatgttcagc agatccctat ccacaagggc caggaaccgc caaccaaaga aggagaagaa
2341 ggagaaggtg gagacagagg tggcaacaga tcttggcctt ggcagataga atatattcat
2401 ttcctaatcc gccaactgat acgcctcttg acttggctat tcagcagctg cagggattgg
2461 ctattgagga tctaccaggt cctccaacca gtactccaga gcctctcaac gacgtcgcaa
2521 agagtccgtg aagtcatcag aattggaata gcctacctac aatatgggtg gcgttatttc
2581 caagaagcag tgcaggcgtg gtggaaattt gcgcgagaga ctcttgcaag cgcgtggaga
2641 gacatatggg agactctggg aagggttgga agagggatac tcgcaatccc taggcgcgtc
2701 aggcaagggc ttgagctcac tctcttgtga
//
last modified: Tue May 31 10:56 2022