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LOCUS	    FJ578093		    2730 bp    DNA     linear	VRL 14-MAY-2009
DEFINITION  Simian immunodeficiency virus isolate AK9F.PK.A2 from USA rev
	    protein (rev) gene, complete cds; tat protein (tat) gene, partial
	    cds; env pseudogene, complete sequence; and nef protein (nef) gene,
	    partial cds
ACCESSION   FJ578093
VERSION     FJ578093.1 GI:229831118
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2730)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Li,H., Learn,G.H., Hraber,P., Giorgi,E.E., Grayson,T.,
	    Sun,C., Chen,Y., Yeh,W.W., Letvin,N.L., Mascola,J.R., Nabel,G.J.,
	    Haynes,B.F., Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H.
	    and Shaw,G.M.
  TITLE     Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or
	    SIVmac251 recapitulates human mucosal infection by HIV-1
  JOURNAL   J. Exp. Med. 206 (5), 1117-1134 (2009)
  PUBMED    19414559
REFERENCE   2 (bases 1 to 2730)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Li,H., Learn,G.H., Giorgi,E.E., Grayson,T., Sun,C.,
	    Hraber,P.T., Yeh,W., Letvin,N.L., Nabel,G.J., Haynes,B.F.,
	    Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2008) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL840b, Birmingham,
	    AL 35294-0024, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code AK9F Sequence name
	    AK9F.PK.A2 Sample date 12-9-04 Viral load 140795 Species SMM Sample
	    tissue plasma Inoculum name SIVsmmE660 Amplification strategy SGA
	    Infection route Intrarectal Dose 6000002 virions DBID 2039532199
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2730
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="AK9F.PK.A2"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="12-Sep-2004"
     gene	     1..2531
		     /gene="rev"
     CDS	     join(1..64,2293..2531)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACQ85885.1"
		     /db_xref="GI:229831119"
		     /translation="MSSTEEELRKRLRLIHFLHQTNPYPQGPGTANQRRRRRRRWRQR
		     WQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPGPPTSTPEPLNDVAKSP"
     gene	     <1..2389
		     /gene="tat"
     CDS	     join(<1..64,2293..2389)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACQ85886.1"
		     /db_xref="GI:229831120"
		     /translation="EQHRRRTPKKTKANPLPASNKSLSTRARNRQPKKEKKEKVETEV
		     ATDLGLGR"
     gene	     71..2730
		     /gene="env"
		     /pseudo="env"
     CDS	     71..2730
		     /gene="env"
		     /pseudo="env"
		     /codon_start="1"
		     /transl_table="1"
     gene	     2564..>2730
		     /gene="nef"
     CDS	     2564..>2730
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACQ85887.1"
		     /db_xref="GI:229831121"
		     /translation="MGGVISKKQCRRGGNLRERLLQARGETYGRLWEGLEEGYSQSLG
		     ASGKGLSSLSC"
BASE COUNT	892 a	 498 c	  670 g    670 t
ORIGIN
       1 atgagcagca ccgaagaaga actccgaaaa agactaaggc taatccactt cctgcatcaa 
      61 acaagtaagt atgggatgtc ttgggaatca gctgcttatc gcgctcttgc tagtaagtgc 
     121 tttagagatt tattgtgttc aatatgtaac agtattctat ggtgtaccag catggaagaa 
     181 tgcgacaatt cccctcttct gtacaaccag gaatagggac acttggggaa caacacaatg 
     241 cttgccagat aatgatgatt actcagaatt ggcaatcagt atcacagagg cttttgatgc 
     301 ttggaataat acagtcacag aacaagcaat agaggatgtg tggaacctct ttgaaacatc 
     361 cattaagccc tgtgtaaaac tcaccccact atgtatagca atgagatgta ataaaactga 
     421 gacagatagg tggggtttga caaggaacgc agggacaaca acaaaatcag caacaacaac 
     481 aacagtagca ccaagtgtag cagaaaatgt tataaatgaa agtaatcctt gcataaaaat 
     541 aatagttgtg caggcttgga acaggagccc atgataggtt gtaaatttaa catgacaggg 
     601 ttaaaaaggg acaaaaggat agaatataat gaaacatggt attcaagaga tttaatctgt 
     661 gagcagtcag caaatgaaag tgagagtaaa tgttacatgc atcattgtaa caccagtgtt 
     721 attcaggaat cctgtgacaa gcattattgg gatgctatta gatttagata ttgtgcaccg 
     781 ccaggttatg ctttgcttag gtgtaatgat tcaaattatt caggctttgc tcctaactgt 
     841 tctaaggtag tggtttcttc atgcacaaga atgatggaaa cgcaaacctc tacttggttt 
     901 ggcttcaatg gtactagggc agaaaataga acatacattt attggcatgg caaaagtaat 
     961 agaaccataa ttagcttaaa taagtattat aatctaacaa tgagatgtag aagaccagga 
    1021 aataagacag ttttaccagt caccattatg tcagggttgg tcttccattc gcagcccata 
    1081 aatgagagac caaaacaggc ctggtgctgg tttggaggaa gctggaaaga ggccatccag 
    1141 gaagtgaagg aaaccttggt caaacatccc aggtatacgg gaactaatga tactaggaaa 
    1201 attaatctaa cagctccagc aggaggagat ccagaagtca cttttatgtg gacaaattgt 
    1261 agaggagaat tcttatactg caaaatgaat tggtttctta attgggtaga ggacagagac 
    1321 caaaagagta gcagatggag acaacaaaat acgagagagc gacagaagaa aaattatgtg 
    1381 ccatgtcata ttagacaaat aatcaacacg tggcacaaag taggcaaaaa tgtatatttg 
    1441 cctcctaggg aaggagacct gacatgtaat tccactgtaa ctagtctcat agcagagata 
    1501 gattggacca ataacaatga gaccaatatc accatgagtg cagaggtggc agaactgtat 
    1561 cgattggagt tgggagatta caaattagta gagattactc caattggctt ggcccccaca 
    1621 agtgtaagaa ggtacaccac aactggtgcc tcaagaaata agagaggggt ctttgtgcta 
    1681 gggttcttgg gttttctcgc gacagcaggt tctgcaatgg gcgcggcgtc gctgacgctg 
    1741 tcggctcagt cccggacttt gttggctggg atagtgcagc aacagcaaca gctgttggat 
    1801 gtggtcaaga gacaacaaga attgttgcga ctgaccgtct ggggaactaa gaacctccag 
    1861 actagagtca ctgctatcga gaagtacctg aaggatcagg cgcagctaaa ttcatgggga 
    1921 tgtgctttta ggcaagtctg tcacactact gtaccatggc caaatgaaac attggtgcct 
    1981 aattggagca atatgacttg gcaagagtgg gaaagacagg ttgacttcct agaggcaaat 
    2041 ataactcaat tattagaaga agcacaaatt cagcaagaaa agaatatgta tgaattgcaa 
    2101 aaactaaata gctgggatat ctttggcaat tggtttgacc ttacttcttg gataagatat 
    2161 atacaatatg gtgtactaat agttttagga gtagtagggt taagaatagt aatatatgta 
    2221 gtgcagatgt tagctaggtt aagacagggt tataggccag tgttctcttc ccctcccgct 
    2281 tatgttcagc agatccctat ccacaagggc caggaaccgc caaccaaaga aggagaagaa 
    2341 ggagaaggtg gagacagagg tggcaacaga tcttggcctt ggcagataga atatattcat 
    2401 ttcctaatcc gccaactgat acgcctcttg acttggctat tcagcagctg cagggattgg 
    2461 ctattgagga tctaccaggt cctccaacca gtactccaga gcctctcaac gacgtcgcaa 
    2521 agagtccgtg aagtcatcag aattggaata gcctacctac aatatgggtg gcgttatttc 
    2581 caagaagcag tgcaggcgtg gtggaaattt gcgcgagaga ctcttgcaag cgcgtggaga 
    2641 gacatatggg agactctggg aagggttgga agagggatac tcgcaatccc taggcgcgtc 
    2701 aggcaagggc ttgagctcac tctcttgtga 
//
last modified: Tue May 31 10:56 2022


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