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LOCUS	    FJ578053		    2725 bp    DNA     linear	VRL 14-MAY-2009
DEFINITION  Simian immunodeficiency virus isolate 251.K18 from USA rev protein
	    (rev) gene, complete cds; tat protein (tat) gene, partial cds;
	    envelope glycoprotein (env) gene, complete cds; and nef protein
	    (nef) gene, partial cds
ACCESSION   FJ578053
VERSION     FJ578053.1 GI:229830914
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2725)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Li,H., Learn,G.H., Hraber,P., Giorgi,E.E., Grayson,T.,
	    Sun,C., Chen,Y., Yeh,W.W., Letvin,N.L., Mascola,J.R., Nabel,G.J.,
	    Haynes,B.F., Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H.
	    and Shaw,G.M.
  TITLE     Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or
	    SIVmac251 recapitulates human mucosal infection by HIV-1
  JOURNAL   J. Exp. Med. 206 (5), 1117-1134 (2009)
  PUBMED    19414559
REFERENCE   2 (bases 1 to 2725)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Li,H., Learn,G.H., Giorgi,E.E., Grayson,T., Sun,C.,
	    Hraber,P.T., Yeh,W., Letvin,N.L., Nabel,G.J., Haynes,B.F.,
	    Bhattacharya,T., Perelson,A.S., Korber,B.T., Hahn,B.H. and
	    Shaw,G.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2008) Department of Medicine, University of
	    Alabama at Birmingham, 720 20th Street South, KAUL840b, Birmingham,
	    AL 35294-0024, USA
COMMENT     SGA sequence of the viral stock SIVmac251.
FEATURES             Location/Qualifiers
     source	     1..2725
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="251.K18"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /country="USA"
		     /collection_date="Dec-2002"
     gene	     1..2541
		     /gene="rev"
     CDS	     join(1..70,2288..2541)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACQ85726.1"
		     /db_xref="GI:229830915"
		     /translation="MSSHGREEELRKRLRLIHLLHQTNSYPTGPGTANQRRQRRRRWR
		     RRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTKDS
		     RSPQD"
     gene	     <1..2384
		     /gene="tat"
     CDS	     join(<1..70,2288..2384)
		     /gene="tat"
		     /codon_start="3"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACQ85727.1"
		     /db_xref="GI:229830916"
		     /translation="EQSRKRRRTPKKAKANTSSASNKLIPNRTRHCQPEKAKKETVEK
		     AVATAPGLGR"
     gene	     77..2725
		     /gene="env"
     CDS	     77..2725
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACQ85728.1"
		     /db_xref="GI:229830917"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSTITTTAPTTPNTTSTKSIDMVNETSSCIVHDNC
		     TGLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSI
		     IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTST
		     WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFH
		     SQPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYAGINNTDKINLTAPRGGDPEVT
		     FMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPCHIRQIINTWHKVGKN
		     VYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPI
		     GLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQ
		     QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
		     PWPNASLTPNWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG
		     NWFDLASWIKYIQYGVYVVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHT
		     QQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAY
		     QILQPILQRLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLW
		     ETLRRGGRWILAIPRRIRQGLELTLL"
     gene	     2559..>2725
		     /gene="nef"
     CDS	     2559..>2725
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ACQ85729.1"
		     /db_xref="GI:229830918"
		     /translation="MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLG
		     GLGKGLSSRSC"
BASE COUNT	865 a	 517 c	  664 g    679 t
ORIGIN
       1 atgagcagtc acggaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattgacaaa atcatcaaca ataacaacaa cagcaccaac 
     481 aacaccaaat acaacatcaa caaagtcaat agacatggtc aatgagacta gttcttgtat 
     541 agttcatgat aattgcacag gcttggaaca agagcaaatg ataggctgta aattcaacat 
     601 gacagggtta aaaagagaca agacaaagga gtacaatgaa acttggtact ctacagattt 
     661 ggtttgtgaa caagggaata gcactgataa tgaaagtaga tgttacatga atcactgtaa 
     721 cacttctatt atccaagagt cttgtgacaa gcattattgg gatactatta gatttaggta 
     781 ttgtgcacct ccaggttatg ctttgcttag atgtaatgac acaaattatt caggctttat 
     841 gcctaaatgt tctaaggtgg tggtctcttc atgcacaagg atgatggaga cacagacttc 
     901 tacttggttt ggctttaatg gaactagagc agaaaataga acttatattt actggcatgg 
     961 tagggataat aggactataa ttagtttaaa taagtattat aatctaacaa tgaaatgtag 
    1021 aagaccagga aataagacag ttttgccagt caccattatg tctggattgg ttttccactc 
    1081 acaaccagtc aatgagaggc caaaccaggc atggtgttgg tttggaggaa attggaagga 
    1141 tgcaataaaa gaggtgaagc agaccattgt caaacatccc aggtatgctg gaattaacaa 
    1201 tactgataaa atcaatttga cggctcctag aggaggagat ccggaagtta ccttcatgtg 
    1261 gacaaattgc agaggagagt ttctctactg taaaatgaat tggtttctaa attgggtaga 
    1321 ggatagggat gtaactaccc agaggccaaa ggaacggcat agaaggaatt acgtgccgtg 
    1381 tcatattaga caaataatca acacttggca taaagtaggc aaaaatgttt atttgcctcc 
    1441 aagagaggga gacctcacgt gtaactccac agtgaccagt ctcatagcaa acatagattg 
    1501 gactgatgga aaccaaacta atatcaccat gagtgcagag gtggcagaac tgtatcgatt 
    1561 ggagttggga gattataaat tagtagagat cactccgatt ggcttggccc ccacagatgt 
    1621 gaagaggtac actactggtg gcacctcaag aaataaaaga ggggtctttg tgctagggtt 
    1681 cttgggtttt ctcgcaacgg caggttctgc aatgggcgcg gcgtcgttga cgctgaccgc 
    1741 tcagtcccgg actttattgg ctgggatagt gcagcaacag caacagctgt tggacgtggt 
    1801 caagagacaa caagaattgt tgcgactgac cgtctgggga acaaagaacc tccagactag 
    1861 ggtcactgcc atcgagaagt acttaaagga ccaggcgcag ctgaatgctt ggggatgtgc 
    1921 gtttagacaa gtctgccaca ctactgtacc atggccaaat gcaagtctaa caccaaattg 
    1981 gaacaatgat acttggcaag agtgggagcg aaaggttgac ttcttggagg aaaatataac 
    2041 agccctccta gaagaggcac aaattcaaca agagaagaac atgtatgaat tacaaaagtt 
    2101 gaatagctgg gatgtgtttg gcaattggtt tgaccttgct tcttggataa agtatataca 
    2161 atatggagtt tatgtagttg taggagtaat actgttaaga atagtgatct atatagtaca 
    2221 aatgctagct aagttaaggc aggggtatag gccagtgttc tcttccccac cctcttattt 
    2281 ccagcagact catacccaac aggacccggc actgccaacc agagaaggca aagaaggaga 
    2341 cggtggagaa ggcggtggca acagctcctg gccttggcag atagaatata ttcatttcct 
    2401 gatccgccaa ctgatacgcc tcttgacttg gctattcagc aactgcagaa ccttgctatc 
    2461 gagagcatac cagatcctcc aaccaatact ccagaggctc tctgcgaccc tacgaaggat 
    2521 tcgagaagtc ctcaggactg aactgaccta cctacaatat gggtggagct atttccatga 
    2581 ggcggtccaa gccggctgga gatctgcgac agagactctt gcgggcgcgt ggggagactt 
    2641 atgggagact cttaggagag gtggaagatg gatcctcgca atccctagga ggattaggca 
    2701 agggcttgag ctcacgctct tgtga
//
last modified: Tue May 31 10:56 2022


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