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LOCUS FJ530643 767 bp DNA linear VRL 01-FEB-2009
DEFINITION HIV-1 isolate in98rt from India reverse transcriptase (pol) gene,
partial cds
ACCESSION FJ530643
VERSION FJ530643.1 GI:221858331
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 767)
Show all sequences for reference 1
AUTHORS Deshpande,A., Jauvin,V., Pinson,P., Jeannot,A.C. and Fleury,H.J.
TITLE Phylogenetic analysis of HIV-1 reverse transcriptase sequences from
382 patients recruited in JJ Hospital of Mumbai, India, between
2002 and 2008.
JOURNAL AIDS Res. Hum. Retroviruses. 25(6); 633-5 (2009)
PUBMED 19534630
REFERENCE 2 (bases 1 to 767)
Show all sequences for reference 2
AUTHORS Fleury,H.J., Jauvin,V., Pinson,P., Jeannot,A.C. and Deshpande,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2008) Universite Bordeaux 2, Laboratoire de
Virologie EA2968, 146 rue Leo Saignat, Bordeaux 33076, France
FEATURES Location/Qualifiers
source 1..767
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="in98rt"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="2003"
gene <1..>767
/gene="pol"
CDS <1..>767
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ACM41116.1"
/db_xref="GI:221858332"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKE
GKITXIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAVF
QSSMTRILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVN"
BASE COUNT 297 a 127 c 164 g 176 t 3 other
ORIGIN
1 cccattagtc ctattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaag
61 gttaaacaat ggccattgac agaagagaaa ataaaagcat taacagcaat ttgtgatgaa
121 atggagaagg aaggaaaaat tacaaraatt gggcctgaaa atccatataa cactccaata
181 tttgctataa aaaagaagga cagtactaag tggagaaaat tagtagattt cagggaactc
241 aataaaagaa ctcaagattt ttgggaagtt caattaggaa taccacaccc agcagggtta
301 aaaaagaaaa aatcagtgac agtgctggat gtgggggatg catatttttc agttccttta
361 tatgaagact tcaggaaata tactgcattc acyataccta gtrtaaacaa tgaaacacca
421 gggattaggt atcaatataa tgtgcttcca cagggatgga aaggatcacc agcagtattc
481 cagagtagca tgacaagaat cttagagccc tttagggcac aaaatccaga aatagtcatc
541 tatcaatata tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca
601 aaaatagagg agttaagaga acatctgtta aggtggggat ttaccacacc agacaagaaa
661 catcagaaag aacctccatt tctttggatg gggtatgaac tccatcctga caaatggaca
721 gtacagccta tacagctgcc cgaaaaagat agctggacgg tcaatga
//
last modified: Tue May 31 10:56 2022