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LOCUS	    FJ520314		     721 bp    DNA     linear	VRL 24-APR-2009
DEFINITION  HIV-1 isolate i11bclone12 from India pol protein (pol) gene,
	    partial cds
ACCESSION   FJ520314
VERSION     FJ520314.1 GI:226993412
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 721)
            Show all sequences for reference 1
  AUTHORS   Moorthy,A., Gupta,A., Bhosale,R., Tripathy,S., Sastry,J.,
	    Kulkarni,S., Thakar,M., Bharadwaj,R., Kagal,A., Bhore,A.V.,
	    Patil,S., Kulkarni,V., Venkataramani,V., Balasubramaniam,U.,
	    Suryavanshi,N., Ziemniak,C., Gupte,N., Bollinger,R. and Persaud,D.
  TITLE     Nevirapine resistance and breast-milk HIV transmission: effects of
	    single and extended-dose nevirapine prophylaxis in subtype C
	    HIV-infected infants
  JOURNAL   PLoS ONE 4 (1), E4096 (2009)
  PUBMED    19119321
REFERENCE   2 (bases 1 to 721)
            Show all sequences for reference 2
  AUTHORS   Foley,B.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MSK710, Los Alamos, NM 87544, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name i11bclone12 Patient code
	    i11b Sample date 09/2006 Isolate name clone12 Sample Timepoint
	    52wks Sample city Pune Subtype C DBID 861021608
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..721
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="i11bclone12"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="Sep-2006"
		     /note="subtype: C"
     gene	     <1..>721
		     /gene="pol"
     CDS	     <1..>721
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACP00111.1"
		     /db_xref="GI:226993413"
		     /translation="PVETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKI
		     TRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKS
		     VTVLDVGDAYFSVPLYEGFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQAS
		     MTKILEPFRRQNPDIVIYQYMDDLYVGSDLELGQHRAKIEELRGHLLRWGFTTPDKKH
		     QKEPPFLWMGYELHPDKWTVQP"
BASE COUNT	281 a	 121 c	  156 g    163 t
ORIGIN
       1 gtcctgttga aactgtacca gtaaaattaa agccaggaat ggatggccca aaggttaaac 
      61 aatggccatt gacagaagaa aaaataaaag cattaacggc aatttgtgat gaaatggaaa 
     121 aggaaggaaa aattacaaga attgggcctg agaatccata taacactcca atatttgcca 
     181 taaaaaagaa ggacagtact aaatggagaa aattagtaga tttcagggaa ctcaataaaa 
     241 gaactcaaga tttttgggaa gttcagttag gaataccgca cccagcaggg ttaaaaaaga 
     301 aaaaatcagt gacagtactg gatgtggggg atgcatattt ttcagttcca ttatatgaag 
     361 gcttcaggaa atatactgca tttaccatac ctagtacaaa caatgaaaca ccagggatta 
     421 ggtatcaata taatgtgctt ccacagggat ggaaaggatc accagcaata tttcaggcta 
     481 gcatgacaaa aatcctagag ccctttagaa gacaaaatcc agacatagtc atctatcaat 
     541 atatggatga cttgtatgta ggatcggact tagaactagg gcaacataga gcaaaaatag 
     601 aggagttaag aggacatctg ttaaggtggg gattcaccac accagacaag aaacatcaga 
     661 aagaaccccc atttctttgg atggggtatg aactccatcc tgataaatgg acagtacagc 
     721 c
//
last modified: Tue May 31 10:56 2022


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