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LOCUS FJ443210 2547 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0004216 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443210
VERSION FJ443210.1 GI:226969011
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2547)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2547)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name CHV0004216 Patient code
CAP222 Isolate name CAP222.1.11E2 Subtype C Patient cohort CHAVI001
Sample date Jan 1 2006 Sample tissue plasma Amplification strategy
SGA Risk Factor SG Patient age 19 Patient sex F Fiebig Stage 1 or 2
Viral Load 69700 Sample city Durban DBID 607535147
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2547
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0004216"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2547
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 913 a 429 c 592 g 613 t
ORIGIN
1 atgagagtga gggggatatt gaggaattgg ccaccatggt ggatatgggg catcttaggc
61 ttttggatgg taatgattta taatgtgttg ggaaacttgt gggtcacagt atattatggg
121 gtacctgtgt ggacagatgc aaaaactact ctattctgtg catcagaggc taaagcatat
181 gagaaagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag ttttggaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atgaggatat aatcagtata tgggaccaaa gtctaaaacc atgtgtaaaa
361 ttgaccccac tctgtgtcac tttaaactgt atagatgcaa atgttaatgt tacagttaca
421 gtcaatgaca gcatggctga agaaataaaa aattgctctt tcaatacaac cacagaaata
481 agagataaga aacagaaagc atatgcactt ttttatagac ctgatatagt accacttaat
541 ggggataacc agagttatat attaataaat tgcaatgcct caaccataac acaagcctgt
601 ccaaaggtca cttttgaccc gattcctata cattattgtg ctccagctgg ttatgcgatt
661 ctaaagtgta ataataagac attcaatggg acaggaccat gcaataatgt cagcacagta
721 caatgtacac atggaattaa gccagtggta tccactcaac tactgttaaa tggtagccta
781 gcagaagggg agataattat tagatctgaa gatctggaag aaaataccaa aacaataata
841 gtacacctta ataaatctgt agaaattgtg tgtacaagac ccggcaataa tacaagaaaa
901 agtataagga taggaccagg acaaacattc tatgcaacag gtgacataat aggagacata
961 agacaagcac attgtaacat tagtaggaaa aattggacca caactttaga acaaataaaa
1021 gagaaattaa aagaacactt ccccagtaag aatataacgt ttcaaccatc ctcaggaggg
1081 gacccagaaa ttacaacaca tagctttaat tgtagaggag aatttttcta ttgtaataca
1141 tcaaaactgt ttaatagtaa tagtagtgaa ctatttaata gtagtgaaac agaaaacatc
1201 acacttccat gcaaaataaa acaaattata aacatgtggc aaggggtagg acgagcaatg
1261 tacgcccctc ccattgaagg aaacataaca tgtagctcaa atatcacagg attgctattg
1321 acacgtgatg gagaaaaaaa tagaacaaaa gagacattta ggcctggagg aggaaatatg
1381 aaagacaatt ggagaagtga attatataaa tataaagtgg tagaaattaa gccattggga
1441 atagcaccaa ctggggcaaa aaggagagtg gtggagaaag aaaaaagagc agtgggaata
1501 ggagctgtga tccttgggtt cttgggagca gcaggaagca ctatgggcgc ggcgtcaata
1561 acgctgacgg tacaggccag acaactgttg tctggtatag tgcaacagca aaataatttg
1621 ctgagggcta tagaggcgca acaacatatg ttgcaactca cagtctgggg cattaagcag
1681 ctccaggcaa gagtcctggc tttggaaaga tacctacagg atcaacagct cctaggaatt
1741 tggggctgct ctggaaaact catctgcacc actaatgtgc cttggaattc cagttggagt
1801 aataaaactc aggatgaaat ttggggtaat atgacctgga tgcagtggga gaaagaaatt
1861 agcaattaca cagacacaat atacaggtta cttgaagaat cgcaaaccca gcaggagcag
1921 aatgaaaaag atttattagc attggacaag tggcaaaatc tgtggagttg gtttaacata
1981 acaaattggc tgtggtatat aaaaatattc ataatgatag taggaggctt gataggtcta
2041 agaataattt ttgcagtgtt atctctaata aataaagtta ggcagggata ctcacctttg
2101 tcatttcaga cccttatccc aaacccgagg ggacccgaca ggctcggaag aatcgaagaa
2161 gaaggtggag agcaagacag agacagatcc gttcgattag tgagcggatt cttatcgctt
2221 gcctgggacg atctgcggag cctgtgcctc ttcagctacc accaattgag aaacttcata
2281 ttgattgtgg cgagagcagt ggaaatcctg ggacgcaaca gcctcagggg actacagaga
2341 gggtgggaag cccttaagta tctgggaaat cttgtgctgt attggggtct ggagctaaaa
2401 aggaatgcta ttaagctgtt agataccata gcaatagcag tagctgaggg aactgatagg
2461 attatagaat tcatacaaag aatttgtaga gctgtccgca acctacctag aagaataaga
2521 cagggcgctg aagcagcttt gctataa
//
last modified: Tue May 31 10:56 2022