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LOCUS	    FJ443210		    2547 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0004216 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443210
VERSION     FJ443210.1 GI:226969011
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2547)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2547)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name CHV0004216 Patient code
	    CAP222 Isolate name CAP222.1.11E2 Subtype C Patient cohort CHAVI001
	    Sample date Jan 1 2006 Sample tissue plasma Amplification strategy
	    SGA Risk Factor SG Patient age 19 Patient sex F Fiebig Stage 1 or 2
	    Viral Load 69700 Sample city Durban DBID 607535147
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2547
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0004216"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2547
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	913 a	 429 c	  592 g    613 t
ORIGIN
       1 atgagagtga gggggatatt gaggaattgg ccaccatggt ggatatgggg catcttaggc 
      61 ttttggatgg taatgattta taatgtgttg ggaaacttgt gggtcacagt atattatggg 
     121 gtacctgtgt ggacagatgc aaaaactact ctattctgtg catcagaggc taaagcatat 
     181 gagaaagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatag ttttggaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaggatat aatcagtata tgggaccaaa gtctaaaacc atgtgtaaaa 
     361 ttgaccccac tctgtgtcac tttaaactgt atagatgcaa atgttaatgt tacagttaca 
     421 gtcaatgaca gcatggctga agaaataaaa aattgctctt tcaatacaac cacagaaata 
     481 agagataaga aacagaaagc atatgcactt ttttatagac ctgatatagt accacttaat 
     541 ggggataacc agagttatat attaataaat tgcaatgcct caaccataac acaagcctgt 
     601 ccaaaggtca cttttgaccc gattcctata cattattgtg ctccagctgg ttatgcgatt 
     661 ctaaagtgta ataataagac attcaatggg acaggaccat gcaataatgt cagcacagta 
     721 caatgtacac atggaattaa gccagtggta tccactcaac tactgttaaa tggtagccta 
     781 gcagaagggg agataattat tagatctgaa gatctggaag aaaataccaa aacaataata 
     841 gtacacctta ataaatctgt agaaattgtg tgtacaagac ccggcaataa tacaagaaaa 
     901 agtataagga taggaccagg acaaacattc tatgcaacag gtgacataat aggagacata 
     961 agacaagcac attgtaacat tagtaggaaa aattggacca caactttaga acaaataaaa 
    1021 gagaaattaa aagaacactt ccccagtaag aatataacgt ttcaaccatc ctcaggaggg 
    1081 gacccagaaa ttacaacaca tagctttaat tgtagaggag aatttttcta ttgtaataca 
    1141 tcaaaactgt ttaatagtaa tagtagtgaa ctatttaata gtagtgaaac agaaaacatc 
    1201 acacttccat gcaaaataaa acaaattata aacatgtggc aaggggtagg acgagcaatg 
    1261 tacgcccctc ccattgaagg aaacataaca tgtagctcaa atatcacagg attgctattg 
    1321 acacgtgatg gagaaaaaaa tagaacaaaa gagacattta ggcctggagg aggaaatatg 
    1381 aaagacaatt ggagaagtga attatataaa tataaagtgg tagaaattaa gccattggga 
    1441 atagcaccaa ctggggcaaa aaggagagtg gtggagaaag aaaaaagagc agtgggaata 
    1501 ggagctgtga tccttgggtt cttgggagca gcaggaagca ctatgggcgc ggcgtcaata 
    1561 acgctgacgg tacaggccag acaactgttg tctggtatag tgcaacagca aaataatttg 
    1621 ctgagggcta tagaggcgca acaacatatg ttgcaactca cagtctgggg cattaagcag 
    1681 ctccaggcaa gagtcctggc tttggaaaga tacctacagg atcaacagct cctaggaatt 
    1741 tggggctgct ctggaaaact catctgcacc actaatgtgc cttggaattc cagttggagt 
    1801 aataaaactc aggatgaaat ttggggtaat atgacctgga tgcagtggga gaaagaaatt 
    1861 agcaattaca cagacacaat atacaggtta cttgaagaat cgcaaaccca gcaggagcag 
    1921 aatgaaaaag atttattagc attggacaag tggcaaaatc tgtggagttg gtttaacata 
    1981 acaaattggc tgtggtatat aaaaatattc ataatgatag taggaggctt gataggtcta 
    2041 agaataattt ttgcagtgtt atctctaata aataaagtta ggcagggata ctcacctttg 
    2101 tcatttcaga cccttatccc aaacccgagg ggacccgaca ggctcggaag aatcgaagaa 
    2161 gaaggtggag agcaagacag agacagatcc gttcgattag tgagcggatt cttatcgctt 
    2221 gcctgggacg atctgcggag cctgtgcctc ttcagctacc accaattgag aaacttcata 
    2281 ttgattgtgg cgagagcagt ggaaatcctg ggacgcaaca gcctcagggg actacagaga 
    2341 gggtgggaag cccttaagta tctgggaaat cttgtgctgt attggggtct ggagctaaaa 
    2401 aggaatgcta ttaagctgtt agataccata gcaatagcag tagctgaggg aactgatagg 
    2461 attatagaat tcatacaaag aatttgtaga gctgtccgca acctacctag aagaataaga 
    2521 cagggcgctg aagcagcttt gctataa
//
last modified: Tue May 31 10:56 2022


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