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LOCUS FJ443178 2595 bp DNA linear VRL 25-APR-2009
DEFINITION HIV-1 isolate CHV0004183 from South Africa envelope glycoprotein
(env) pseudogene, complete sequence
ACCESSION FJ443178
VERSION FJ443178.1 GI:226968893
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2595)
Show all sequences for reference 1
AUTHORS Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
Korber,B.T., Swanstrom,R. and Williamson,C.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Quantitating the multiplicity of infection with human
immunodeficiency virus type 1 subtype C reveals a non-poisson
distribution of transmitted variants
JOURNAL J. Virol. 83 (8), 3556-3567 (2009)
PUBMED 19193811
REFERENCE 2 (bases 1 to 2595)
Show all sequences for reference 2
AUTHORS Hraber,P.T.
CONSRTM CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
Immunology Consortium
TITLE Direct Submission
JOURNAL Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## HLA type A301 A2301 B1503 B5802 C511 C611
Sequence Name CHV0004183 Patient code CAP69 Isolate name
CAP69.1.12B11 Subtype C Patient cohort CHAVI001 Sample date Jan 1
2006 Sample tissue plasma Amplification strategy SGA Risk Factor SG
Patient age 39 Patient sex F Fiebig Stage 1 or 2 Viral Load 15300
Sample city Durban DBID 3342870182 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2595
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CHV0004183"
/db_xref="taxon:11676"
/country="South Africa"
/note="subtype: C"
gene 1..2595
/gene="env"
/note="envelope glycoprotein"
/pseudo="envelope glycoprotein"
BASE COUNT 908 a 447 c 617 g 623 t
ORIGIN
1 atgagagtga tggggacatt gaggaattgt caacaatggt ggagatgggg aatcttaggc
61 ttttggatgc taattatttg tagtacaggg aaaaacttgt gggtcacagt ttattatggg
121 gtacctgtgt ggagagaagc aaaaactact ctattctgtg catcagatgc taaagcatat
181 gacagagagg tgcataatgt ctgggctaca catgcctgtg tacccacaga ccctaaccca
241 caagaaatgg ttttgggaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atgaggatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaag
361 ttgaccccac tctgtgtcac tttagaatgt aataataatg ttaccttcaa tagtaccaga
421 aatagtactg ttgccaccct caatagtacc atggaagggg aaggggaaat gaaaaattgc
481 tctttcaatg taaccacaga actaagagat aggaaaaagc ctgcatatgc acttttttat
541 aagcttgata tagtatcact taatgagagt cggaacaacc atagtgtata tagattaata
601 aattgtaata cctcaacaat aacacaagcc tgtccaaagg tcacttttga cccaattcct
661 atacattatt gtgctccggc tggttttgcg attctaaaat gtaataataa tacattcaat
721 ggaacaggac catgcactaa tgtcagcaca gtacaatgta cacatggaat taagccagtg
781 gtatcaactc aattactgtt aaatggtagt ctagcagaag aaaggatagt aattagatct
841 gaaaatctga cagataatgt caaaacaata atagtacagc ttcgcgaccc tgtagaaatt
901 gtgtgtacaa ggcctaataa taatacaaga aaaagtgtga ggataggacc aggacaaaca
961 ttctatgcag caggaggcat aataggaaat ataagacaag cacattgtaa cattagcaaa
1021 caggcttgga ataagactct acaagaggta ggagaaaaac tacaagaaca cttccgtaat
1081 aaaacaataa agtttgaacc acattcagga ggggacctag aaattacaac acatagcttt
1141 aattgtagag gagaattttt ctattgtaat acatcagaac tgtttaatag tacatacaat
1201 agtacataca atggtacatc cagtgaaaac agcacactca cactcccatg caaaataaaa
1261 caaattataa gaatgtggca gggggtagga caggcaatgt atgcccctcc cattgcagga
1321 aacataacat gtaaatcaaa tatcacagga ctgctattga catgggatgg cggagataac
1381 aaggaaaata acaatacaga gatattcaga cctggaggag gagacatgag ggacaattgg
1441 agaagtgagt tatataaata caaagtggta gaaattaagc cactaggaat agcacccact
1501 gaggcaaaaa ggagagtggt ggagagagaa aaaagagcag caggactagg agctgtgttc
1561 cttgggttct tgggagcagc aggaagcact atgggcgcag cgtcgataac gctgacggta
1621 caggccagac aattattgtc tggtatagtg caacagcaaa gcaatttgct gaaggctata
1681 gaggcgcaac agaatatgtt gcgactcacg gtctggggca ttaagcagct ccaggcaaga
1741 gtcctggcta tcgaaagata cctaaaggat caacagctcc tagggatttg gggctgctct
1801 ggaaaactca tctgcaccac tgctgtgcct tggaactcca gttggagcaa taaatctcaa
1861 acagatattt gggataacat gacttggatg cagtgggata gagaaattaa taattacaca
1921 gaaacaatat acaggttgct tgcagaatcg cagaaccagc aagaacaaaa tgaaaaggat
1981 ttactagcat tggacagttg gaacagtctg tggaattggt ttggcataac aaaatggttg
2041 tggtatataa aaatattcat aatgatagtg ggaggcttga tagggttaag aataattttt
2101 gctgtacttt ctgtagtgaa tagagttagg cagggatact cacctttgtc gttccagacc
2161 cttaccccac acccgagggg actcgacagg ctcggaagaa tcgaagaaga aggtggagag
2221 caagacaaag acagatccat tcgattagtg agcggattct tagctcttgc ctgggacgac
2281 ctacggagcc tgtgcctttc cagctaccac ctattgagag acttcatatt ggtggtagcg
2341 agagcagtgg aacttctggg acgcagcagc ctcaggggac tacagagagg gtgggaagcc
2401 cttaagtatc tgggaaatct tgtgcagtat tggggtctgg aactaaaaaa gagtgctatt
2461 agtctgtttg ataccatagc aataacagta gctgaaggaa cagatagaat tatagaatta
2521 gtacaaagaa tctgtagagc tatccgcaac atacctagaa gattaagaca gggcttggaa
2581 acagcattgc tataa
//
last modified: Tue May 31 10:56 2022