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LOCUS	    FJ443178		    2595 bp    DNA     linear	VRL 25-APR-2009
DEFINITION  HIV-1 isolate CHV0004183 from South Africa envelope glycoprotein
	    (env) pseudogene, complete sequence
ACCESSION   FJ443178
VERSION     FJ443178.1 GI:226968893
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2595)
            Show all sequences for reference 1
  AUTHORS   Abrahams,M.R., Anderson,J.A., Giorgi,E.E., Seoighe,C., Mlisana,K.,
	    Ping,L.H., Athreya,G.S., Treurnicht,F.K., Keele,B.F., Wood,N.,
	    Salazar-Gonzalez,J.F., Bhattacharya,T., Chu,H., Hoffman,I.,
	    Galvin,S., Mapanje,C., Kazembe,P., Thebus,R., Fiscus,S., Hide,W.,
	    Cohen,M.S., Karim,S.A., Haynes,B.F., Shaw,G.M., Hahn,B.H.,
	    Korber,B.T., Swanstrom,R. and Williamson,C.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Quantitating the multiplicity of infection with human
	    immunodeficiency virus type 1 subtype C reveals a non-poisson
	    distribution of transmitted variants
  JOURNAL   J. Virol. 83 (8), 3556-3567 (2009)
  PUBMED    19193811
REFERENCE   2 (bases 1 to 2595)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.T.
  CONSRTM   CAPRISA Acute Infection Study Team; Center for HIV-AIDS Vaccine
	    Immunology Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2008) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MS K710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## HLA type A301 A2301 B1503 B5802 C511 C611
	    Sequence Name CHV0004183 Patient code CAP69 Isolate name
	    CAP69.1.12B11 Subtype C Patient cohort CHAVI001 Sample date Jan 1
	    2006 Sample tissue plasma Amplification strategy SGA Risk Factor SG
	    Patient age 39 Patient sex F Fiebig Stage 1 or 2 Viral Load 15300
	    Sample city Durban DBID 3342870182 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2595
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CHV0004183"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="subtype: C"
     gene	     1..2595
		     /gene="env"
		     /note="envelope glycoprotein"
		     /pseudo="envelope glycoprotein"
BASE COUNT	908 a	 447 c	  617 g    623 t
ORIGIN
       1 atgagagtga tggggacatt gaggaattgt caacaatggt ggagatgggg aatcttaggc 
      61 ttttggatgc taattatttg tagtacaggg aaaaacttgt gggtcacagt ttattatggg 
     121 gtacctgtgt ggagagaagc aaaaactact ctattctgtg catcagatgc taaagcatat 
     181 gacagagagg tgcataatgt ctgggctaca catgcctgtg tacccacaga ccctaaccca 
     241 caagaaatgg ttttgggaaa tgtaacagaa agttttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaggatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaag 
     361 ttgaccccac tctgtgtcac tttagaatgt aataataatg ttaccttcaa tagtaccaga 
     421 aatagtactg ttgccaccct caatagtacc atggaagggg aaggggaaat gaaaaattgc 
     481 tctttcaatg taaccacaga actaagagat aggaaaaagc ctgcatatgc acttttttat 
     541 aagcttgata tagtatcact taatgagagt cggaacaacc atagtgtata tagattaata 
     601 aattgtaata cctcaacaat aacacaagcc tgtccaaagg tcacttttga cccaattcct 
     661 atacattatt gtgctccggc tggttttgcg attctaaaat gtaataataa tacattcaat 
     721 ggaacaggac catgcactaa tgtcagcaca gtacaatgta cacatggaat taagccagtg 
     781 gtatcaactc aattactgtt aaatggtagt ctagcagaag aaaggatagt aattagatct 
     841 gaaaatctga cagataatgt caaaacaata atagtacagc ttcgcgaccc tgtagaaatt 
     901 gtgtgtacaa ggcctaataa taatacaaga aaaagtgtga ggataggacc aggacaaaca 
     961 ttctatgcag caggaggcat aataggaaat ataagacaag cacattgtaa cattagcaaa 
    1021 caggcttgga ataagactct acaagaggta ggagaaaaac tacaagaaca cttccgtaat 
    1081 aaaacaataa agtttgaacc acattcagga ggggacctag aaattacaac acatagcttt 
    1141 aattgtagag gagaattttt ctattgtaat acatcagaac tgtttaatag tacatacaat 
    1201 agtacataca atggtacatc cagtgaaaac agcacactca cactcccatg caaaataaaa 
    1261 caaattataa gaatgtggca gggggtagga caggcaatgt atgcccctcc cattgcagga 
    1321 aacataacat gtaaatcaaa tatcacagga ctgctattga catgggatgg cggagataac 
    1381 aaggaaaata acaatacaga gatattcaga cctggaggag gagacatgag ggacaattgg 
    1441 agaagtgagt tatataaata caaagtggta gaaattaagc cactaggaat agcacccact 
    1501 gaggcaaaaa ggagagtggt ggagagagaa aaaagagcag caggactagg agctgtgttc 
    1561 cttgggttct tgggagcagc aggaagcact atgggcgcag cgtcgataac gctgacggta 
    1621 caggccagac aattattgtc tggtatagtg caacagcaaa gcaatttgct gaaggctata 
    1681 gaggcgcaac agaatatgtt gcgactcacg gtctggggca ttaagcagct ccaggcaaga 
    1741 gtcctggcta tcgaaagata cctaaaggat caacagctcc tagggatttg gggctgctct 
    1801 ggaaaactca tctgcaccac tgctgtgcct tggaactcca gttggagcaa taaatctcaa 
    1861 acagatattt gggataacat gacttggatg cagtgggata gagaaattaa taattacaca 
    1921 gaaacaatat acaggttgct tgcagaatcg cagaaccagc aagaacaaaa tgaaaaggat 
    1981 ttactagcat tggacagttg gaacagtctg tggaattggt ttggcataac aaaatggttg 
    2041 tggtatataa aaatattcat aatgatagtg ggaggcttga tagggttaag aataattttt 
    2101 gctgtacttt ctgtagtgaa tagagttagg cagggatact cacctttgtc gttccagacc 
    2161 cttaccccac acccgagggg actcgacagg ctcggaagaa tcgaagaaga aggtggagag 
    2221 caagacaaag acagatccat tcgattagtg agcggattct tagctcttgc ctgggacgac 
    2281 ctacggagcc tgtgcctttc cagctaccac ctattgagag acttcatatt ggtggtagcg 
    2341 agagcagtgg aacttctggg acgcagcagc ctcaggggac tacagagagg gtgggaagcc 
    2401 cttaagtatc tgggaaatct tgtgcagtat tggggtctgg aactaaaaaa gagtgctatt 
    2461 agtctgtttg ataccatagc aataacagta gctgaaggaa cagatagaat tatagaatta 
    2521 gtacaaagaa tctgtagagc tatccgcaac atacctagaa gattaagaca gggcttggaa 
    2581 acagcattgc tataa
//
last modified: Tue May 31 10:56 2022


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