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LOCUS	    FJ442058		     897 bp    DNA     linear	VRL 28-APR-2009
DEFINITION  HIV-2 isolate 17B9 from United Kingdom integrase (pol) gene,
	    partial cds
ACCESSION   FJ442058
VERSION     FJ442058.1 GI:227430748
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 897)
            Show all sequences for reference 1
  AUTHORS   Xu,L., Anderson,J., Garrett,N., Ferns,B., Wildfire,A., Cook,P.,
	    Workman,J., Graham,S. and Smit,E.
  TITLE     Dynamics of raltegravir resistance profile in an HIV type
	    2-infected patient.
  JOURNAL   AIDS Res. Hum. Retroviruses. 25(8); 843-7 (2009)
  PUBMED    19618998
REFERENCE   2 (bases 1 to 897)
            Show all sequences for reference 2
  AUTHORS   Xu,L., Anderson,J., Garrett,N. and Smit,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2008) Health Protection Agency, Heart of England
	    NHS Foundation Trust, Birmingham B9 5SS, U.K.
FEATURES             Location/Qualifiers
     source	     1..897
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="17B9"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="United Kingdom"
		     /collection_date="29-Sep-2007"
     gene	     <1..>897
		     /gene="pol"
     CDS	     <1..>897
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ACP28361.1"
		     /db_xref="GI:227430749"
		     /translation="FLEKIEPAQEEHEKYHGNVKELVHKFGIPQLVAKQIVNSCDKCQ
		     QKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPRETGRQAALFLL
		     KLASRWPTTHLHTDNGANFTSQDVKMVAWWVGIEQTFGVPCNPQSQGVVEAMNHHLKN
		     QIDRLRDQAVSIETVVLMATHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFLQAKNL
		     KFKTFQVYYREGRDQLWKGPGELLWKGEGAVIIKVGTEIKVVPRRKAKIIRHYGGGKE
		     LDRSADMEDTRQAGEVAQSDQVP"
BASE COUNT	345 a	 161 c	  217 g    174 t
ORIGIN
       1 ttcttagaaa agatagaacc agcacaggaa gagcatgaaa aatatcatgg caatgtaaaa 
      61 gaactagtcc ataaatttgg aatcccacaa ttagtggcaa aacagatagt aaattcctgt 
     121 gataaatgcc aacaaaaagg ggaagctatt catggacagg taaatgcaga actaggaaca 
     181 tggcagatgg actgtacaca tttagaagga aaaattataa tagtggcagt ccatgtagcc 
     241 agtgggttta tagaagcaga agtaatacct cgggaaacag gaagacaggc agctctcttc 
     301 ctgttaaaac tggccagcag atggcctacc acacacctgc acacagacaa cggtgccaac 
     361 ttcacctcac aagatgtgaa gatggtagcc tggtgggtag gaatagagca aacctttgga 
     421 gtaccctgta acccacaaag tcaaggagta gtagaagcga tgaaccatca tctaaaaaat 
     481 caaatagaca gactcagaga tcaagcagta tcaatagaga cagttgtact aatggcaact 
     541 cactgcatga attttaaaag aaggggagga ataggggata tgacccctgc agaaagacta 
     601 gttaacatga taaccacaga gcaagaaata cagttcctcc aagcaaaaaa tttaaaattc 
     661 aaaactttcc aggtctatta cagagaaggc agagatcaac tctggaaggg acctggtgaa 
     721 ctattgtgga aaggggaagg agcagtcatc ataaaggtag ggacagaaat caaagtagta 
     781 cccagaagaa aagcaaaaat tataaggcac tatggaggag gaaaagagtt ggatcgtagt 
     841 gccgacatgg aagataccag gcaggctgga gaggtggcac agtctgatca agtacct
//
last modified: Tue May 31 10:56 2022


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