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LOCUS FJ396020 2697 bp DNA linear VRL 03-NOV-2008
DEFINITION HIV-1 isolate QA413.1007M.ENV.H6 from Kenya envelope glycoprotein
(env) gene, complete cds
ACCESSION FJ396020
VERSION FJ396020.1 GI:210061180
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2697)
Show all sequences for reference 1
AUTHORS Blish,C.A., Dogan,O.C., Derby,N.R., Nguyen,M.-A., Chohan,B.,
Richardson,B.A. and Overbaugh,J.
TITLE Human immunodeficiency virus type 1 superinfection occurs despite
relatively robust neutralizing antibody responses.
JOURNAL J. Virol.. 82(24); 12094-103 (2008)
PUBMED 18842728
REFERENCE 2 (bases 1 to 2697)
Show all sequences for reference 2
AUTHORS Blish,C.A., Dogan,O.C., Derby,N.R., Nguyen,M.A., Chohan,B.,
Richardson,B.A. and Overbaugh,J.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2008) Human Biology, Fred Hutchinson Cancer
Research Center, 1100 Fairview Ave N, Seattle, WA 98109, USA
FEATURES Location/Qualifiers
source 1..2697
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="QA413.1007M.ENV.H6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Kenya"
/collection_date="26-Aug-1998"
gene 1..2583
/gene="env"
CDS 1..2583
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACJ05670.1"
/db_xref="GI:210061181"
/translation="MRVMGIQMTWQYLLGWGTIILGMIMIHSAAQNLWVTVYYGVPVW
HDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEKFNMWKNNMVEQ
MHTDIISLWDQSLKPCVKLTPLCVTLHCTNVSSISNTNMTEETKNVKEEIKNCSFNMT
TELRDKKQEVYSLFYRLDIVQIKESNNSTNTSKYRLINCNTSAITQACPKVSFEPIPI
HYCAPAGFAILKCKDKEFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEKIMIR
SENITDNAKNIIVQFTQPVKINCTRPNNNTRTSIRIGPGQTFYATGEIIGDIRKAHCN
VSRAEWNSTLQNVTEQLRTYFKNKTIIFNSSSGGDPEITMHSFNCGGEFFYCNTSGLF
HSTWDDNNTRNNETARNNTITLPCRIKQIINMWQRVGQAMYAPPIKGVIRCESNITGL
ILTRDGGLNNNTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRARRRVVGREKR
AVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLKLT
VWGIKQLQARVLAVEKYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSFEEIWENMT
WLQWDKEINNYTDIIYSLIEKSQNQQEKNEQDLLALDKWASLWSWFDITQWLWYIRIF
IIIVGGLIGLRIVFAVLSVINRVRQGYSPLSFQTLTPNPRGLDRPGRIEEEGGEQGRD
KSIRLVNGFLAIAWDDLRSLCLFSYHRLRDFILIAARIVELLGRSSLRGLRLGWEGLK
YLWNLLVYWGQELKNSAISLVDTVAIVVAGWTDRIIEIGQGIARAILHIPRRIRQGFE
RALL"
BASE COUNT 949 a 460 c 639 g 649 t
ORIGIN
1 atgagagtga tggggataca gatgacttgg cagtacttat tgggatgggg aactataatc
61 ttggggatga taatgatcca tagtgctgca caaaacttgt gggttactgt ctattatggg
121 gtacctgtgt ggcatgacgc agataccacc ttattttgtg catcagatgc taaagcatac
181 gagacagaaa agcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatac atttggaaaa tgtgacagaa aagtttaaca tgtggaaaaa taacatggta
301 gagcagatgc atacagatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaag
361 ttaacccctc tttgtgttac tttacactgt accaatgtta gcagcatcag caacacgaac
421 atgacagaag aaacaaaaaa cgtgaaagaa gaaataaaaa actgctcttt caatatgaca
481 acagaactaa gggataagaa acaggaagta tattcacttt tttatagact tgatatagta
541 caaattaagg aaagtaataa tagtactaat accagtaagt atagattaat aaattgtaat
601 acctcagcca ttacacaggc ttgtccaaag gtatcctttg agccaattcc catacattat
661 tgtgccccag ctggttttgc gatactaaag tgtaaggata aggagttcaa tggaacagga
721 ctatgtaaga atgtcagcac agtacaatgc acacatggaa tcaagccagt agtatcaact
781 cagttgctgt taaatggcag tctagcagaa gaaaagataa tgattagatc tgaaaatatc
841 acagacaatg ccaaaaacat aatagtacaa tttacccagc ctgtaaaaat taattgtacc
901 agacctaaca acaatacaag aacaagtata cgtataggac caggacaaac attctatgca
961 acaggtgaaa taatagggga tataagaaaa gcacattgta atgtcagtag agcagaatgg
1021 aatagcactt tgcaaaatgt aactgaacaa ttaagaacat actttaagaa caaaacaata
1081 atatttaata gctcctcagg aggggatcca gaaatcacga tgcatagttt taattgtgga
1141 ggagaatttt tttattgtaa tacatcaggc ctgtttcata gtacttggga tgacaataat
1201 actaggaata atgagactgc cagaaataat actataactc tcccatgtag aataaagcaa
1261 attataaata tgtggcagag ggtaggacaa gcaatgtatg cccctcccat caaaggagta
1321 ataaggtgtg aatcaaacat tacaggacta atattaacaa gagatggtgg acttaataac
1381 aatacagaga ccttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta
1441 tataagtata aagtagtaaa aattgaacca ctaggagtag cacccaccag ggcaaggaga
1501 agagtggtgg gaagagaaaa aagagcagtt ggaataggag ctgtcttcct tgggttctta
1561 ggagcagcag gaagcactat gggcgcggcg tcaataacgc tgacggtaca ggccagacaa
1621 ttattgtctg gcatagtgca acagcaaagc aatttgctga gggctataga ggctcaacaa
1681 catctgttga aactcacggt ctggggcatt aaacagctcc aggcaagagt cctggctgtg
1741 gaaaaatacc taaaggatca acagctccta ggaatttggg gctgctctgg aaagctcatc
1801 tgcaccacta atgtgccctg gaactctagt tggagtaata aatctttcga ggaaatatgg
1861 gagaacatga cctggctgca atgggataaa gaaattaaca attacacaga cataatatat
1921 agtctaattg aaaaatcgca gaaccagcag gaaaagaatg aacaagactt attggcattg
1981 gacaagtggg caagtctgtg gagttggttt gacataacac aatggctgtg gtatataagg
2041 atatttataa taatagtagg aggcttaata ggattaagaa tagtttttgc tgtgctttct
2101 gtaataaata gagttaggca gggatactca ccactatcgt ttcagaccct taccccaaac
2161 ccaaggggtc tcgacaggcc cggaagaatc gaagaagaag gtggagagca aggcagagac
2221 aaatcgattc gattagtgaa cggattctta gcgattgcct gggacgatct gcggagcctg
2281 tgcctcttca gttaccaccg cttgagagac ttcatcttga ttgctgcgag gattgtggaa
2341 cttctgggac gcagcagtct cagggggttg agactggggt gggaaggcct caagtatctg
2401 tggaatctcc tagtgtattg gggtcaggaa ctaaagaata gtgctattag tttggttgat
2461 accgtagcaa tagtagtagc tggctggaca gataggatta tagaaatagg acaaggaatt
2521 gctagagcta ttctccacat acctagaaga atcagacagg gctttgaaag agctttgcta
2581 taacatgggt ggcaaatggt caaaaagtag catagtggga tggcctgagg ttagggaaag
2641 aatgagacgt gctccttcac cagcagcacc aggagtagga gcagtatctc aagacgc
//
last modified: Tue May 31 10:56 2022