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LOCUS	    FJ396020		    2697 bp    DNA     linear	VRL 03-NOV-2008
DEFINITION  HIV-1 isolate QA413.1007M.ENV.H6 from Kenya envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   FJ396020
VERSION     FJ396020.1 GI:210061180
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2697)
            Show all sequences for reference 1
  AUTHORS   Blish,C.A., Dogan,O.C., Derby,N.R., Nguyen,M.-A., Chohan,B.,
	    Richardson,B.A. and Overbaugh,J.
  TITLE     Human immunodeficiency virus type 1 superinfection occurs despite
	    relatively robust neutralizing antibody responses.
  JOURNAL   J. Virol.. 82(24); 12094-103 (2008)
  PUBMED    18842728
REFERENCE   2 (bases 1 to 2697)
            Show all sequences for reference 2
  AUTHORS   Blish,C.A., Dogan,O.C., Derby,N.R., Nguyen,M.A., Chohan,B.,
	    Richardson,B.A. and Overbaugh,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2008) Human Biology, Fred Hutchinson Cancer
	    Research Center, 1100 Fairview Ave N, Seattle, WA 98109, USA
FEATURES             Location/Qualifiers
     source	     1..2697
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="QA413.1007M.ENV.H6"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Kenya"
		     /collection_date="26-Aug-1998"
     gene	     1..2583
		     /gene="env"
     CDS	     1..2583
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACJ05670.1"
		     /db_xref="GI:210061181"
		     /translation="MRVMGIQMTWQYLLGWGTIILGMIMIHSAAQNLWVTVYYGVPVW
		     HDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEKFNMWKNNMVEQ
		     MHTDIISLWDQSLKPCVKLTPLCVTLHCTNVSSISNTNMTEETKNVKEEIKNCSFNMT
		     TELRDKKQEVYSLFYRLDIVQIKESNNSTNTSKYRLINCNTSAITQACPKVSFEPIPI
		     HYCAPAGFAILKCKDKEFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEKIMIR
		     SENITDNAKNIIVQFTQPVKINCTRPNNNTRTSIRIGPGQTFYATGEIIGDIRKAHCN
		     VSRAEWNSTLQNVTEQLRTYFKNKTIIFNSSSGGDPEITMHSFNCGGEFFYCNTSGLF
		     HSTWDDNNTRNNETARNNTITLPCRIKQIINMWQRVGQAMYAPPIKGVIRCESNITGL
		     ILTRDGGLNNNTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRARRRVVGREKR
		     AVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIEAQQHLLKLT
		     VWGIKQLQARVLAVEKYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKSFEEIWENMT
		     WLQWDKEINNYTDIIYSLIEKSQNQQEKNEQDLLALDKWASLWSWFDITQWLWYIRIF
		     IIIVGGLIGLRIVFAVLSVINRVRQGYSPLSFQTLTPNPRGLDRPGRIEEEGGEQGRD
		     KSIRLVNGFLAIAWDDLRSLCLFSYHRLRDFILIAARIVELLGRSSLRGLRLGWEGLK
		     YLWNLLVYWGQELKNSAISLVDTVAIVVAGWTDRIIEIGQGIARAILHIPRRIRQGFE
		     RALL"
BASE COUNT	949 a	 460 c	  639 g    649 t
ORIGIN
       1 atgagagtga tggggataca gatgacttgg cagtacttat tgggatgggg aactataatc 
      61 ttggggatga taatgatcca tagtgctgca caaaacttgt gggttactgt ctattatggg 
     121 gtacctgtgt ggcatgacgc agataccacc ttattttgtg catcagatgc taaagcatac 
     181 gagacagaaa agcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatac atttggaaaa tgtgacagaa aagtttaaca tgtggaaaaa taacatggta 
     301 gagcagatgc atacagatat aatcagttta tgggaccaaa gcctaaagcc atgtgtaaag 
     361 ttaacccctc tttgtgttac tttacactgt accaatgtta gcagcatcag caacacgaac 
     421 atgacagaag aaacaaaaaa cgtgaaagaa gaaataaaaa actgctcttt caatatgaca 
     481 acagaactaa gggataagaa acaggaagta tattcacttt tttatagact tgatatagta 
     541 caaattaagg aaagtaataa tagtactaat accagtaagt atagattaat aaattgtaat 
     601 acctcagcca ttacacaggc ttgtccaaag gtatcctttg agccaattcc catacattat 
     661 tgtgccccag ctggttttgc gatactaaag tgtaaggata aggagttcaa tggaacagga 
     721 ctatgtaaga atgtcagcac agtacaatgc acacatggaa tcaagccagt agtatcaact 
     781 cagttgctgt taaatggcag tctagcagaa gaaaagataa tgattagatc tgaaaatatc 
     841 acagacaatg ccaaaaacat aatagtacaa tttacccagc ctgtaaaaat taattgtacc 
     901 agacctaaca acaatacaag aacaagtata cgtataggac caggacaaac attctatgca 
     961 acaggtgaaa taatagggga tataagaaaa gcacattgta atgtcagtag agcagaatgg 
    1021 aatagcactt tgcaaaatgt aactgaacaa ttaagaacat actttaagaa caaaacaata 
    1081 atatttaata gctcctcagg aggggatcca gaaatcacga tgcatagttt taattgtgga 
    1141 ggagaatttt tttattgtaa tacatcaggc ctgtttcata gtacttggga tgacaataat 
    1201 actaggaata atgagactgc cagaaataat actataactc tcccatgtag aataaagcaa 
    1261 attataaata tgtggcagag ggtaggacaa gcaatgtatg cccctcccat caaaggagta 
    1321 ataaggtgtg aatcaaacat tacaggacta atattaacaa gagatggtgg acttaataac 
    1381 aatacagaga ccttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta 
    1441 tataagtata aagtagtaaa aattgaacca ctaggagtag cacccaccag ggcaaggaga 
    1501 agagtggtgg gaagagaaaa aagagcagtt ggaataggag ctgtcttcct tgggttctta 
    1561 ggagcagcag gaagcactat gggcgcggcg tcaataacgc tgacggtaca ggccagacaa 
    1621 ttattgtctg gcatagtgca acagcaaagc aatttgctga gggctataga ggctcaacaa 
    1681 catctgttga aactcacggt ctggggcatt aaacagctcc aggcaagagt cctggctgtg 
    1741 gaaaaatacc taaaggatca acagctccta ggaatttggg gctgctctgg aaagctcatc 
    1801 tgcaccacta atgtgccctg gaactctagt tggagtaata aatctttcga ggaaatatgg 
    1861 gagaacatga cctggctgca atgggataaa gaaattaaca attacacaga cataatatat 
    1921 agtctaattg aaaaatcgca gaaccagcag gaaaagaatg aacaagactt attggcattg 
    1981 gacaagtggg caagtctgtg gagttggttt gacataacac aatggctgtg gtatataagg 
    2041 atatttataa taatagtagg aggcttaata ggattaagaa tagtttttgc tgtgctttct 
    2101 gtaataaata gagttaggca gggatactca ccactatcgt ttcagaccct taccccaaac 
    2161 ccaaggggtc tcgacaggcc cggaagaatc gaagaagaag gtggagagca aggcagagac 
    2221 aaatcgattc gattagtgaa cggattctta gcgattgcct gggacgatct gcggagcctg 
    2281 tgcctcttca gttaccaccg cttgagagac ttcatcttga ttgctgcgag gattgtggaa 
    2341 cttctgggac gcagcagtct cagggggttg agactggggt gggaaggcct caagtatctg 
    2401 tggaatctcc tagtgtattg gggtcaggaa ctaaagaata gtgctattag tttggttgat 
    2461 accgtagcaa tagtagtagc tggctggaca gataggatta tagaaatagg acaaggaatt 
    2521 gctagagcta ttctccacat acctagaaga atcagacagg gctttgaaag agctttgcta 
    2581 taacatgggt ggcaaatggt caaaaagtag catagtggga tggcctgagg ttagggaaag 
    2641 aatgagacgt gctccttcac cagcagcacc aggagtagga gcagtatctc aagacgc
//
last modified: Tue May 31 10:56 2022


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