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LOCUS	    FJ348569		     907 bp    RNA     linear	VRL 09-NOV-2008
DEFINITION  HIV-1 isolate 07ZA.NEV1259W52P from South Africa pol protein (pol)
	    gene, partial cds
ACCESSION   FJ348569
VERSION     FJ348569.1 GI:211908161
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 907)
            Show all sequences for reference 1
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Persistent minority K103N mutations among women exposed to
	    single-dose nevirapine and virologic response to nonnucleoside
	    reverse-transcriptase inhibitor-based therapy.
  JOURNAL   Clin. Infect. Dis.. 48(4); 462-72 (2009)
  PUBMED    19133804
REFERENCE   2 (bases 1 to 907)
            Show all sequences for reference 2
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2008) AIDS Virus Research Unit, National
	    Institute for Communicable Diseases, 1 Modderfontein Rd
	    Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES             Location/Qualifiers
     source	     1..907
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="07ZA.NEV1259W52P"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="Feb-2007"
		     /note="subtype: C"
     gene	     <1..>907
		     /gene="pol"
     CDS	     <1..>907
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACJ12558.1"
		     /db_xref="GI:211908162"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
		     GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KRSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNEAPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRKHNPDIVIXQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKV
		     RQLCKLLRGTKALTDVVPLTEEAQLE"
BASE COUNT	359 a	 156 c	  189 g    197 t      6 other
ORIGIN
       1 ccaattagcc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa 
      61 gttaaacaat ggccattrac agaagagaaa ataaaagcat taacagcaat ttgtgaagaa 
     121 atggaaaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccagta 
     181 tttgctataa aaaagaagga cagtactaag tggagaaaay tagtagattt cagggaactc 
     241 aataaaagaa ctcaagactt ctgggaagtt caattaggaa taccacaccc agcagggtta 
     301 aaaaagaaaa gatcagtgac agtgctagat gtgggggatg catatttttc agttccttta 
     361 gatgaaagct tcaggaaata tactgcattc accataccta gtataaacaa tgaagcacca 
     421 gggattagat atcaatataa tgtgcttcca cagggatgga aaggatcacc agcaatattc 
     481 cagagtagca tgacaaaaat yttagagccc tttaggaaac acaacccaga catagttatc 
     541 yatcaatata tggatgactt gtatgtagga tctgacttag aaatagggca acacagagca 
     601 aaaatagarg agttaagaga acacctattg aartggggac ttaccacacc agataagaaa 
     661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca 
     721 gtacagccta tacagctgcc agacaaggag agctggactg tcaatgatat acagaagtta 
     781 gtgggaaaat taaattgggc aagtcagatt tacccaggga ttaaggtaag gcaactttgt 
     841 aaactcctta ggggaaccaa agcactaaca gatgtagtac cactaactga agaagcacaa 
     901 ttagaat
//
last modified: Tue May 31 10:56 2022


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