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LOCUS FJ348569 907 bp RNA linear VRL 09-NOV-2008
DEFINITION HIV-1 isolate 07ZA.NEV1259W52P from South Africa pol protein (pol)
gene, partial cds
ACCESSION FJ348569
VERSION FJ348569.1 GI:211908161
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 907)
Show all sequences for reference 1
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Persistent minority K103N mutations among women exposed to
single-dose nevirapine and virologic response to nonnucleoside
reverse-transcriptase inhibitor-based therapy.
JOURNAL Clin. Infect. Dis.. 48(4); 462-72 (2009)
PUBMED 19133804
REFERENCE 2 (bases 1 to 907)
Show all sequences for reference 2
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2008) AIDS Virus Research Unit, National
Institute for Communicable Diseases, 1 Modderfontein Rd
Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES Location/Qualifiers
source 1..907
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="07ZA.NEV1259W52P"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="Feb-2007"
/note="subtype: C"
gene <1..>907
/gene="pol"
CDS <1..>907
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACJ12558.1"
/db_xref="GI:211908162"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
GKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KRSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNEAPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRKHNPDIVIXQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKV
RQLCKLLRGTKALTDVVPLTEEAQLE"
BASE COUNT 359 a 156 c 189 g 197 t 6 other
ORIGIN
1 ccaattagcc ccattgaaac tgtaccagta aaattaaagc caggaatgga tggcccaaaa
61 gttaaacaat ggccattrac agaagagaaa ataaaagcat taacagcaat ttgtgaagaa
121 atggaaaagg aaggaaaaat tacaaaaatt gggcctgaaa atccatataa cactccagta
181 tttgctataa aaaagaagga cagtactaag tggagaaaay tagtagattt cagggaactc
241 aataaaagaa ctcaagactt ctgggaagtt caattaggaa taccacaccc agcagggtta
301 aaaaagaaaa gatcagtgac agtgctagat gtgggggatg catatttttc agttccttta
361 gatgaaagct tcaggaaata tactgcattc accataccta gtataaacaa tgaagcacca
421 gggattagat atcaatataa tgtgcttcca cagggatgga aaggatcacc agcaatattc
481 cagagtagca tgacaaaaat yttagagccc tttaggaaac acaacccaga catagttatc
541 yatcaatata tggatgactt gtatgtagga tctgacttag aaatagggca acacagagca
601 aaaatagarg agttaagaga acacctattg aartggggac ttaccacacc agataagaaa
661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caaatggaca
721 gtacagccta tacagctgcc agacaaggag agctggactg tcaatgatat acagaagtta
781 gtgggaaaat taaattgggc aagtcagatt tacccaggga ttaaggtaag gcaactttgt
841 aaactcctta ggggaaccaa agcactaaca gatgtagtac cactaactga agaagcacaa
901 ttagaat
//
last modified: Tue May 31 10:56 2022