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LOCUS	    FJ348490		     869 bp    RNA     linear	VRL 09-NOV-2008
DEFINITION  HIV-1 isolate 05ZA.NEV1015W70P from South Africa pol protein (pol)
	    gene, partial cds
ACCESSION   FJ348490
VERSION     FJ348490.1 GI:211908053
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 869)
            Show all sequences for reference 1
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Persistent minority K103N mutations among women exposed to
	    single-dose nevirapine and virologic response to nonnucleoside
	    reverse-transcriptase inhibitor-based therapy.
  JOURNAL   Clin. Infect. Dis.. 48(4); 462-72 (2009)
  PUBMED    19133804
REFERENCE   2 (bases 1 to 869)
            Show all sequences for reference 2
  AUTHORS   Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
	    Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
	    and Kuhn,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2008) AIDS Virus Research Unit, National
	    Institute for Communicable Diseases, 1 Modderfontein Rd
	    Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES             Location/Qualifiers
     source	     1..869
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="05ZA.NEV1015W70P"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="Aug-2005"
		     /note="subtype: C"
     gene	     <1..>869
		     /gene="pol"
     CDS	     <1..>869
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACJ12504.1"
		     /db_xref="GI:211908054"
		     /translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
		     GKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKX
		     NKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNATPGIRYQYNVLPQGWKGSPAIF
		     QSSMTKILEPFRAKNPGIVIYQYMDDLYVGSDLEIGQHRAKIEELRDHLLKWGFTTPD
		     KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
		     KQLCKLLRGVKALT"
BASE COUNT	337 a	 147 c	  183 g    191 t     11 other
ORIGIN
       1 ccaattagtc ccattgagac tgtaccagta aaattaaagc caggaatgga tggcccaaag 
      61 gttaaacaat ggccaytgac agaagaaaaa ataaaagcat taacagcaat ttgtgaagaa 
     121 atggaraagg aaggraaaat tacaaaaatt gggcctgaaa atccatacaa yactccaata 
     181 tttgccataa aaaagaagga cagtactaag tggagraaat tagtagattt yagggaactc 
     241 aataaaagaa ctcaagactt ttgggaggtt caattaggaa taccacaccc atcagggtta 
     301 aaaargaaca aatcagtrac agtactggat gtgggggatg catatttttc agttccttta 
     361 gatgaaggct tcaggaaata tactgcattc accataccta gtataaacaa tgcgacacca 
     421 gggattagat atcaatayaa tgtgctacca cagggatgga aaggatcacc agcaatattc 
     481 cagagtagca tgacaaaaat cttagagccc tttagagcaa aaaatccagg aatagtcatc 
     541 tatcaatata tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca 
     601 aaaatagaag agttaaggga tcatctatta aagtggggat ttaccacacc agacaagaaa 
     661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caartggaca 
     721 gtacagccca twcagctgcc agaaaaagat agctggactg tcaatgatat acagaagtta 
     781 gtgggaaaat taaactgggc aagtcagatt tacccaggga ttaaagtaaa gcaactgtgt 
     841 aaactcctta ggggggtcaa agcactaac
//
last modified: Tue May 31 10:56 2022


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