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LOCUS FJ348490 869 bp RNA linear VRL 09-NOV-2008
DEFINITION HIV-1 isolate 05ZA.NEV1015W70P from South Africa pol protein (pol)
gene, partial cds
ACCESSION FJ348490
VERSION FJ348490.1 GI:211908053
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 869)
Show all sequences for reference 1
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Persistent minority K103N mutations among women exposed to
single-dose nevirapine and virologic response to nonnucleoside
reverse-transcriptase inhibitor-based therapy.
JOURNAL Clin. Infect. Dis.. 48(4); 462-72 (2009)
PUBMED 19133804
REFERENCE 2 (bases 1 to 869)
Show all sequences for reference 2
AUTHORS Coovadia,A., Hunt,G., Abrams,E.J., Sherman,G., Meyers,T., Barry,G.,
Malan,E., Marais,B., Stehlau,R., Ledwaba,J., Hammer,S.M., Morris,L.
and Kuhn,L.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2008) AIDS Virus Research Unit, National
Institute for Communicable Diseases, 1 Modderfontein Rd
Sandringham, Johannesburg, Gauteng 2131, South Africa
FEATURES Location/Qualifiers
source 1..869
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="05ZA.NEV1015W70P"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="Aug-2005"
/note="subtype: C"
gene <1..>869
/gene="pol"
CDS <1..>869
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACJ12504.1"
/db_xref="GI:211908054"
/translation="PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKE
GKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKX
NKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNATPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFRAKNPGIVIYQYMDDLYVGSDLEIGQHRAKIEELRDHLLKWGFTTPD
KKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKV
KQLCKLLRGVKALT"
BASE COUNT 337 a 147 c 183 g 191 t 11 other
ORIGIN
1 ccaattagtc ccattgagac tgtaccagta aaattaaagc caggaatgga tggcccaaag
61 gttaaacaat ggccaytgac agaagaaaaa ataaaagcat taacagcaat ttgtgaagaa
121 atggaraagg aaggraaaat tacaaaaatt gggcctgaaa atccatacaa yactccaata
181 tttgccataa aaaagaagga cagtactaag tggagraaat tagtagattt yagggaactc
241 aataaaagaa ctcaagactt ttgggaggtt caattaggaa taccacaccc atcagggtta
301 aaaargaaca aatcagtrac agtactggat gtgggggatg catatttttc agttccttta
361 gatgaaggct tcaggaaata tactgcattc accataccta gtataaacaa tgcgacacca
421 gggattagat atcaatayaa tgtgctacca cagggatgga aaggatcacc agcaatattc
481 cagagtagca tgacaaaaat cttagagccc tttagagcaa aaaatccagg aatagtcatc
541 tatcaatata tggatgactt gtatgtagga tctgacttag aaatagggca acatagagca
601 aaaatagaag agttaaggga tcatctatta aagtggggat ttaccacacc agacaagaaa
661 catcagaaag aacccccatt tctttggatg gggtatgaac tccatcctga caartggaca
721 gtacagccca twcagctgcc agaaaaagat agctggactg tcaatgatat acagaagtta
781 gtgggaaaat taaactgggc aagtcagatt tacccaggga ttaaagtaaa gcaactgtgt
841 aaactcctta ggggggtcaa agcactaac
//
last modified: Tue May 31 10:56 2022