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LOCUS FJ185950 852 bp DNA linear VRL 17-MAR-2009
DEFINITION HIV-1 isolate ZM214M_SGA_A4 from Zambia envelope glycoprotein (env)
gene, partial cds
ACCESSION FJ185950
VERSION FJ185950.1 GI:224939441
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 852)
Show all sequences for reference 1
AUTHORS Haaland,R.E., Hawkins,P.A., Salazar-Gonzalez,J., Johnson,A.,
Tichacek,A., Karita,E., Manigart,O., Mulenga,J., Keele,B.F.,
Shaw,G.M., Hahn,B.H., Allen,S.A., Derdeyn,C.A. and Hunter,E.
TITLE Inflammatory genital infections mitigate a severe genetic
bottleneck in heterosexual transmission of subtype A and C HIV-1
JOURNAL PLoS Pathog. 5 (1), E1000274 (2009)
PUBMED 19165325
REFERENCE 2 (bases 1 to 852)
Show all sequences for reference 2
AUTHORS Haaland,R.E., Hawkins,P.A., Salazar-Gonzalez,J., Johnson,A.T.,
Tichacek,A., Karita,E., Manigart,O., Mulenga,J., Keele,B.F.,
Shaw,G.M., Hahn,B.H., Allen,S., Derdeyn,C.A. and Hunter,E.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2008) Pathology and Laboratory Medicine, Emory
University, 954 Gatewood Rd NE, Atlanta, GA 30329, USA
FEATURES Location/Qualifiers
source 1..852
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ZM214M_SGA_A4"
/db_xref="taxon:11676"
/country="Zambia"
/collection_date="02-Jul-2003"
/note="subtype: C"
gene <1..>852
/gene="env"
CDS <1..>852
/gene="env"
/note="V1-V4 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACN70139.1"
/db_xref="GI:224939442"
/translation="CSNVDINETSINFNITSNISMKEEMKNCSFKVNSELRDKNRREH
ALFYKLDIVQLNDEGNDSYSYRLINCNTSTIKQACPKVSFEPIPIHYCAPAGYAILKC
NNETFNGSGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEKEIMIRSENLTNNAKTIIV
QLTEAVNITCMRPGNNTRRSVRIGPGQTFYATGEIIGDIRQAHCNISKDKWNQILQNV
SAKLGEHFHGKTIKFEPSSGGDLEITTHSFNCGGEFFYCNTTNLFSRTYTNGSNSNIT
SATITLPC"
BASE COUNT 337 a 145 c 154 g 216 t
ORIGIN
1 tgtagcaatg ttgatattaa tgagacctcc attaatttta atattacctc caatatttcc
61 atgaaggaag agatgaaaaa ctgctctttc aaggtaaact cagaactaag agataaaaac
121 aggagagaac atgcattgtt ttataaactt gatatagtac aacttaatga tgaggggaat
181 gacagctaca gctatagatt aataaattgt aatacctcaa ccataaaaca ggcctgtcca
241 aaggtctctt ttgaaccaat tcctatacat tattgtgctc cagctggtta tgcgattcta
301 aagtgtaata atgagacatt caatggatca gggccatgca ataatgtcag cacagtacaa
361 tgtacacatg gaattaagcc agtggtatca actcaactac tgttgaatgg tagtctagca
421 gaaaaagaaa taatgattag atctgaaaat ctgacaaaca atgccaaaac aataatagta
481 caacttacag aagctgtaaa cattacgtgt atgaggcccg gcaataatac aagaagaagt
541 gtaagaatag ggccaggaca gacattctat gcaacaggag aaataatagg agatataaga
601 caagcacatt gtaacattag taaagataaa tggaaccaaa ttttacaaaa tgtaagcgca
661 aagttaggag aacacttcca tggtaaaaca ataaaatttg aaccatcctc aggaggggac
721 ctagaaatta caacacatag ttttaattgt ggaggagaat ttttctattg caatacaaca
781 aacctgttta gtagaaccta cacgaatgga agtaattcaa atatcacaag tgcaaccatc
841 accctcccat gc
//
last modified: Tue May 31 10:56 2022