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LOCUS FJ030734 1176 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_232_4_1181 from Denmark pol protein (pol) gene,
partial cds
ACCESSION FJ030734
VERSION FJ030734.1 GI:226374046
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_232_4_1181"
/db_xref="taxon:11676"
/country="Denmark"
/collection_date="2001"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52249.1"
/db_xref="GI:226374047"
/translation="PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEDIDLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAXGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSTNNETPGTRYCYNVLPQGWKGSPAIFQHSMTKILEPFRKQNPE
IIIYQYMDDLYVGSDLEIGQHRAKIEELRDHLLKWGFDTPDKKHQKEPPFLWMGYELH
PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVV
"
BASE COUNT 462 a 196 c 244 g 273 t 1 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggagg gcaaataaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataga tttaccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtacgat
181 cagataccta tagaaatctg cgggcataaa gctrtaggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtg
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca gaaagtatac tgcatttacc atacctagta caaacaacga gacaccaggg
721 actagatatt gctacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 catagcatga caaaaatctt agagcctttt agaaaacaaa atccagagat aattatctat
841 cagtatatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa
901 atagaggaac tgagagacca tttgttgaag tggggatttg acacaccaga caaaaaacat
961 cagaaagaac ccccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa tgctgccaga aaaagacagc tggactgtca atgacataca gaaattagtg
1081 ggaaaattaa attgggcaag tcagatttat ccaggaatta aagtaaggca actatgtaaa
1141 ctccttaggg gaaccaaagc actaacagag gtagta
//
last modified: Tue May 31 10:56 2022