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LOCUS	    FJ030734		    1176 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_232_4_1181 from Denmark pol protein (pol) gene,
	    partial cds
ACCESSION   FJ030734
VERSION     FJ030734.1 GI:226374046
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1176)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1176)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1176
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_232_4_1181"
		     /db_xref="taxon:11676"
		     /country="Denmark"
		     /collection_date="2001"
     gene	     <1..>1176
		     /gene="pol"
     CDS	     <1..>1176
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52249.1"
		     /db_xref="GI:226374047"
		     /translation="PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEDIDLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAXGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSTNNETPGTRYCYNVLPQGWKGSPAIFQHSMTKILEPFRKQNPE
		     IIIYQYMDDLYVGSDLEIGQHRAKIEELRDHLLKWGFDTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVV
		     "
BASE COUNT	462 a	 196 c	  244 g    273 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggagg gcaaataaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataga tttaccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtacgat 
     181 cagataccta tagaaatctg cgggcataaa gctrtaggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtg 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca gaaagtatac tgcatttacc atacctagta caaacaacga gacaccaggg 
     721 actagatatt gctacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 catagcatga caaaaatctt agagcctttt agaaaacaaa atccagagat aattatctat 
     841 cagtatatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaggaac tgagagacca tttgttgaag tggggatttg acacaccaga caaaaaacat 
     961 cagaaagaac ccccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa tgctgccaga aaaagacagc tggactgtca atgacataca gaaattagtg 
    1081 ggaaaattaa attgggcaag tcagatttat ccaggaatta aagtaaggca actatgtaaa 
    1141 ctccttaggg gaaccaaagc actaacagag gtagta
//
last modified: Tue May 31 10:56 2022


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