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LOCUS	    FJ030726		    1176 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_198_11_999323 from Denmark pol protein (pol)
	    gene, partial cds
ACCESSION   FJ030726
VERSION     FJ030726.1 GI:226374030
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1176)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1176)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1176
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_198_11_999323"
		     /db_xref="taxon:11676"
		     /country="Denmark"
		     /collection_date="1998"
     gene	     <1..>1176
		     /gene="pol"
     CDS	     <1..>1176
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52241.1"
		     /db_xref="GI:226374031"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMDLPGRWKP
		     KMIGGIGGFIKVRQYDQVPIEICGHKTEGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVRLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKVGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDLQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
		     "
BASE COUNT	461 a	 202 c	  242 g    271 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaaa 
      61 gaagctctac tagatacagg agcagatgat acagtattag aagacatgga tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtaccca tagaaatctg tggacataaa actgaaggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctattg acccaacttg gttgtacttt aaactttccc 
     301 attagtccta ttgaaactgt accagtaaga ttaaagccag gtatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaagttggg cctgaaaatc catacaacac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatccctc aggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccctagat 
     661 aaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa acccagacat agtcatctat 
     841 caatacatgg atgacctgta tgtaggctct gacttagaaa tagggcagca taggacaaaa 
     901 atagaagaac tgagagaaca tctgttaagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaacttc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacctaca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaaagca attatgcaaa 
    1141 ctccttaggg gaaccaaagc actaacagaa gtaata
//
last modified: Tue May 31 10:56 2022


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