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LOCUS FJ030726 1176 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_198_11_999323 from Denmark pol protein (pol)
gene, partial cds
ACCESSION FJ030726
VERSION FJ030726.1 GI:226374030
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_198_11_999323"
/db_xref="taxon:11676"
/country="Denmark"
/collection_date="1998"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52241.1"
/db_xref="GI:226374031"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMDLPGRWKP
KMIGGIGGFIKVRQYDQVPIEICGHKTEGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVRLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKVGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDLQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
"
BASE COUNT 461 a 202 c 242 g 271 t
ORIGIN
1 cctcagatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaaa
61 gaagctctac tagatacagg agcagatgat acagtattag aagacatgga tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caggtaccca tagaaatctg tggacataaa actgaaggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctattg acccaacttg gttgtacttt aaactttccc
301 attagtccta ttgaaactgt accagtaaga ttaaagccag gtatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaagttggg cctgaaaatc catacaacac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatccctc aggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccctagat
661 aaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa acccagacat agtcatctat
841 caatacatgg atgacctgta tgtaggctct gacttagaaa tagggcagca taggacaaaa
901 atagaagaac tgagagaaca tctgttaagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaacttc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacctaca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaaagca attatgcaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtaata
//
last modified: Tue May 31 10:56 2022