View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS FJ030705 924 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_148_1_7832 from France pol protein (pol) gene,
partial cds
ACCESSION FJ030705
VERSION FJ030705.1 GI:226373988
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 924)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 924)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..924
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_148_1_7832"
/db_xref="taxon:11676"
/country="France"
/collection_date="2003"
gene <1..>924
/gene="pol"
CDS <1..>924
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52220.1"
/db_xref="GI:226373989"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFIKP
GMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWR
KLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAF
TIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLY
VGSDLEIGQHRTKIEELRQHLLKWGFTTPDKK"
BASE COUNT 374 a 141 c 189 g 220 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa aaataggagg gcaactaaag
61 gaggctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttaccaggg
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagagatctg cggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttata
301 aagccaggaa tggatggccc aaaagtgaaa caatggccat tgacagaaga aaaaataaaa
361 gcattagtag aaatttgtac agaaatggaa aaggaaggga aaatttcaaa aattgggcct
421 gaaaatccat ataatactcc agtatttgcc ataaagaaaa aagacagtac taaatggaga
481 aaattagtag attttagaga acttaataag agaactcaag acttctggga agttcaatta
541 ggaataccac atcctgcagg attaaaaaag aaaaaatcag taacagtact ggatgtgggt
601 gatgcatatt tttcagttcc cttagataaa gaattcagaa agtatactgc atttaccata
661 cctagtataa ataatgagac accagggatt agatatcagt acaatgtgct tccacaggga
721 tggaaaggat caccagcaat atttcaatgt agcatgacaa aaatcttaga accttttaga
781 aaacaaaatc cagacatagt tatctatcaa tacatggatg atttgtatgt aggatctgac
841 ttagaaatag ggcagcatag aacaaaaata gaggaactga gacagcatct gttaaagtgg
901 ggatttacca caccagacaa aaaa
//
last modified: Tue May 31 10:56 2022