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LOCUS	    FJ030705		     924 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_148_1_7832 from France pol protein (pol) gene,
	    partial cds
ACCESSION   FJ030705
VERSION     FJ030705.1 GI:226373988
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 924)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 924)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..924
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_148_1_7832"
		     /db_xref="taxon:11676"
		     /country="France"
		     /collection_date="2003"
     gene	     <1..>924
		     /gene="pol"
     CDS	     <1..>924
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52220.1"
		     /db_xref="GI:226373989"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFIKP
		     GMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWR
		     KLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKEFRKYTAF
		     TIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLY
		     VGSDLEIGQHRTKIEELRQHLLKWGFTTPDKK"
BASE COUNT	374 a	 141 c	  189 g    220 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa aaataggagg gcaactaaag 
      61 gaggctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttaccaggg 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagagatctg cggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttata 
     301 aagccaggaa tggatggccc aaaagtgaaa caatggccat tgacagaaga aaaaataaaa 
     361 gcattagtag aaatttgtac agaaatggaa aaggaaggga aaatttcaaa aattgggcct 
     421 gaaaatccat ataatactcc agtatttgcc ataaagaaaa aagacagtac taaatggaga 
     481 aaattagtag attttagaga acttaataag agaactcaag acttctggga agttcaatta 
     541 ggaataccac atcctgcagg attaaaaaag aaaaaatcag taacagtact ggatgtgggt 
     601 gatgcatatt tttcagttcc cttagataaa gaattcagaa agtatactgc atttaccata 
     661 cctagtataa ataatgagac accagggatt agatatcagt acaatgtgct tccacaggga 
     721 tggaaaggat caccagcaat atttcaatgt agcatgacaa aaatcttaga accttttaga 
     781 aaacaaaatc cagacatagt tatctatcaa tacatggatg atttgtatgt aggatctgac 
     841 ttagaaatag ggcagcatag aacaaaaata gaggaactga gacagcatct gttaaagtgg 
     901 ggatttacca caccagacaa aaaa
//
last modified: Tue May 31 10:56 2022


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