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LOCUS FJ030686 1176 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_1334_4_1237 from France pol protein (pol) gene,
partial cds
ACCESSION FJ030686
VERSION FJ030686.1 GI:226373950
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_1334_4_1237"
/db_xref="taxon:11676"
/country="France"
/collection_date="2000"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52201.1"
/db_xref="GI:226373951"
/translation="PQITLWQRPLVTIKIEGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQVSVDICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTAEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDRWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVV
"
BASE COUNT 456 a 191 c 247 g 282 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agatagaggg gcaattaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttaccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caggtatccg tagacatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 atcagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaagtt
361 aaacaatggc cattgacagc agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtgttt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacaccccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcctttagat
661 aaagacttta ggaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcacctgc aatattccaa
781 tgtagcatga caaaaatctt agagcctttt agaaagcaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtagggtct gatttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgaag tgggggttta ccacaccaga caaaaaacat
961 cagaaagagc ctccatttct ttggatgggt tatgagctcc atcctgatag atggacagta
1021 cagcctatag tgctaccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac ccaggaatta aagtaagaca attatgtaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtagta
//
last modified: Tue May 31 10:56 2022