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LOCUS	    FJ030686		    1176 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_1334_4_1237 from France pol protein (pol) gene,
	    partial cds
ACCESSION   FJ030686
VERSION     FJ030686.1 GI:226373950
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1176)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1176)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1176
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_1334_4_1237"
		     /db_xref="taxon:11676"
		     /country="France"
		     /collection_date="2000"
     gene	     <1..>1176
		     /gene="pol"
     CDS	     <1..>1176
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52201.1"
		     /db_xref="GI:226373951"
		     /translation="PQITLWQRPLVTIKIEGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQVSVDICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTAEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDRWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVV
		     "
BASE COUNT	456 a	 191 c	  247 g    282 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agatagaggg gcaattaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttaccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caggtatccg tagacatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 atcagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaagtt 
     361 aaacaatggc cattgacagc agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtgttt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacaccccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcctttagat 
     661 aaagacttta ggaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcacctgc aatattccaa 
     781 tgtagcatga caaaaatctt agagcctttt agaaagcaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtagggtct gatttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgaag tgggggttta ccacaccaga caaaaaacat 
     961 cagaaagagc ctccatttct ttggatgggt tatgagctcc atcctgatag atggacagta 
    1021 cagcctatag tgctaccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac ccaggaatta aagtaagaca attatgtaaa 
    1141 ctccttaggg gaaccaaagc actaacagaa gtagta
//
last modified: Tue May 31 10:56 2022


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