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LOCUS FJ030654 1176 bp DNA linear VRL 17-APR-2009
DEFINITION HIV-1 isolate CAS_1104_16_33363 from United Kingdom pol protein
(pol) gene, partial cds
ACCESSION FJ030654
VERSION FJ030654.1 GI:226373886
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Phylogenetic reconstruction of transmission events from individuals
with acute HIV infection: toward more-rigorous epidemiological
definitions
JOURNAL J. Infect. Dis. 199 (3), 427-431 (2009)
PUBMED 19133810
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Brown,A.E.
CONSRTM Concerted Action on Seroconversion to AIDS and Death in Europe
(CASCADE) Collaboration
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
Health Protection Agency Centre for Infections, 61 Colindale
Avenue, London NW9 5EQ, UK
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="CAS_1104_16_33363"
/db_xref="taxon:11676"
/country="United Kingdom"
/collection_date="2002"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACO52169.1"
/db_xref="GI:226373887"
/translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPXPAGLKKKKSVXVLDVGDAYFSVP
LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
IVIYQYMDDLYIGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
"
BASE COUNT 456 a 190 c 247 g 279 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgaccccta gtcacaataa ggataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatctg tgggcataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaatttcccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaagagtt
361 aaacaatggc cattgacaga ggagaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaagaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagtccaa ttaggaatac cacwtcccgc rgggttaaaa
601 aagaaaaaat cagtamcagt attagatgtg ggtgatgcat atttttcagt tcccttagat
661 aaggacttca ggaagtatac tgcwttcacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt acttccacaa ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatttt ggagcctttt agaaaacaaa atccagatat agttatctat
841 caatacatgg atgatttgta tataggatct gacttagaaa tagggcaaca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa gtggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac gcagggatta aagtaaagca attatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtaata
//
last modified: Tue May 31 10:56 2022