HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    FJ030654		    1176 bp    DNA     linear	VRL 17-APR-2009
DEFINITION  HIV-1 isolate CAS_1104_16_33363 from United Kingdom pol protein
	    (pol) gene, partial cds
ACCESSION   FJ030654
VERSION     FJ030654.1 GI:226373886
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1176)
            Show all sequences for reference 1
  AUTHORS   Brown,A.E., Gifford,R.J., Clewley,J.P., Kucherer,C., Masquelier,B.,
	    Porter,K., Balotta,C., Back,N.K., Jorgensen,L.B., de Mendoza,C.,
	    Bhaskaran,K., Gill,O.N., Johnson,A.M. and Pillay,D.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Phylogenetic reconstruction of transmission events from individuals
	    with acute HIV infection: toward more-rigorous epidemiological
	    definitions
  JOURNAL   J. Infect. Dis. 199 (3), 427-431 (2009)
  PUBMED    19133810
REFERENCE   2 (bases 1 to 1176)
            Show all sequences for reference 2
  AUTHORS   Brown,A.E.
  CONSRTM   Concerted Action on Seroconversion to AIDS and Death in Europe
	    (CASCADE) Collaboration
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2008) HIV and Sexually Transmitted Infections,
	    Health Protection Agency Centre for Infections, 61 Colindale
	    Avenue, London NW9 5EQ, UK
FEATURES             Location/Qualifiers
     source	     1..1176
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="CAS_1104_16_33363"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
		     /collection_date="2002"
     gene	     <1..>1176
		     /gene="pol"
     CDS	     <1..>1176
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACO52169.1"
		     /db_xref="GI:226373887"
		     /translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPXPAGLKKKKSVXVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
		     IVIYQYMDDLYIGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
		     "
BASE COUNT	456 a	 190 c	  247 g    279 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccccta gtcacaataa ggataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tgggcataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaatttcccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaagagtt 
     361 aaacaatggc cattgacaga ggagaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaagaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagtccaa ttaggaatac cacwtcccgc rgggttaaaa 
     601 aagaaaaaat cagtamcagt attagatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaggacttca ggaagtatac tgcwttcacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt acttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatttt ggagcctttt agaaaacaaa atccagatat agttatctat 
     841 caatacatgg atgatttgta tataggatct gacttagaaa tagggcaaca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa gtggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac gcagggatta aagtaaagca attatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtaata
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.