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LOCUS EU908767 839 bp RNA linear VRL 23-SEP-2008
DEFINITION HIV-1 isolate pt7w8 from Italy integrase (pol) gene, partial cds
ACCESSION EU908767
VERSION EU908767.1 GI:204304619
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 839)
Show all sequences for reference 1
AUTHORS Canducci,F., Sampaolo,M., Marinozzi,M.C., Boeri,E., Spagnuolo,V.,
Galli,A., Castagna,A., Lazzarin,A., Clementi,M. and Gianotti,N.
TITLE Dynamic patterns of human immunodeficiency virus type 1 integrase
gene evolution in patients failing raltegravir-based salvage
therapies.
JOURNAL AIDS. 23(4); 455-60 (2009)
PUBMED 19165083
REFERENCE 2 (bases 1 to 839)
Show all sequences for reference 2
AUTHORS Canducci,F., Sampaolo,M., Marinozzi,M.C., Boeri,E. and Clementi,M.
TITLE Direct Submission
JOURNAL Submitted (17-JUL-2008) Laboratory of Microbiology and Virology,
University Vita-salute San Raffaele, via Olgettina 58, Milan 20132,
Italy
FEATURES Location/Qualifiers
source 1..839
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="pt7w8"
/db_xref="taxon:11676"
/country="Italy"
/collection_date="Dec-2007"
gene <1..>839
/gene="pol"
CDS <1..>839
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ACH99156.1"
/db_xref="GI:204304620"
/translation="VDKLVSNGIRKVLFLDGIDKAQEEHEKYHSNWRAMAADFNLPPV
VAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVI
PAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTAVKAACWWAGVKQEFGIPYNPQS
QGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVLIHNFKRKGGIGGYSAGERIVDIIA
SDIQTKELQKQITKIQNFRVYYRENRDPLWKGPAKLLWKGEGAVVIQDNSXIKVVPRR
KAK"
BASE COUNT 329 a 126 c 203 g 177 t 4 other
ORIGIN
1 gtagataaat tagtcagtaa tggaatyagg aaagtactat ttttagatgg aatagataaa
61 gcccaagaag aacatgagaa atatcacagt aattggagag caatggctgc tgattttaac
121 ctgccaccgg tagtagcaaa agaaatagta gccagctgtg ataaatgtca gctaaaagga
181 gaagctatgc atggacaagt ggactgtagt ccaggaatat ggcaattgga ttgtacacat
241 ttagaaggaa aaatcatcct ggtagcagty catgtagcca gtggatatat agaagcagaa
301 gttatcccag cagaracagg gcaggaaaca gcatacttta tcttaaaatt agcaggaaga
361 tggccagtaa aaacaataca tacagacaat ggcagcaatt tcaccagtac tgcggttaag
421 gccgcctgtt ggtgggcggg ggtcaagcaa gaatttggca ttccctacaa tccccaaagt
481 caaggagtag tagaatctat gaataaagaa ttaaagaaaa ttataggaca ggtaagagat
541 caggctgaac atcttaagac agcagtacaa atggcagtac tcattcacaa ttttaagaga
601 aaagggggga ttggggggta cagtgcaggg gaaagaatag tagacataat agcatcagac
661 atacaaacta aagaactaca gaaacaaatt acaaaaattc aaaattttcg ggtttattac
721 agggagaaca gagatccact ttggaaagga ccagcaaagc tcctctggaa aggtgaaggg
781 gcagtagtaa tacaggataa tagtgamata aaagtagtgc caagaagaaa agcaaaaat
//
last modified: Tue May 31 10:56 2022