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LOCUS	    EU841436		     630 bp    DNA     linear	VRL 15-SEP-2008
DEFINITION  HIV-1 isolate 20 from Uganda gag protein (gag) gene, partial cds
ACCESSION   EU841436
VERSION     EU841436.1 GI:198443983
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 630)
            Show all sequences for reference 1
  AUTHORS   Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
	    Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
	    and Quinn,T.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2008) Department of Neurology, Johns Hopkins
	    Bayview Medical Center, 4940 Eastern Ave., B Bldg. Rm. 123,
	    Baltimore, MD 21224, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Sacktor,N., Nakasujja,N., Skolasky,R.L., Rezapour,M., Robertson,K.,
	    Musisi,S., Katabira,E., Ronald,A., Clifford,D.B., Laeyendecker,O.
	    and Quinn,T.C.
  TITLE     HIV subtype D is associated with dementia, compared with subtype A,
	    in immunosuppressed individuals at risk of cognitive impairment in
	    Kampala, Uganda
  JOURNAL   Clin. Infect. Dis. 49 (5), 780-786 (2009)
  PUBMED    19622045
FEATURES             Location/Qualifiers
     source	     1..630
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="20"
		     /isolation_source="male patient"
		     /db_xref="taxon:11676"
		     /country="Uganda: Kampala"
		     /note="collected between Sep-2005 and Jan-2007; Memorial
		     Sloan Kettering Dementia Scale (MSK) = 0.5 subtype: A1"
     gene	     <1..>630
		     /gene="gag"
     CDS	     <1..>630
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACH88174.1"
		     /db_xref="GI:198443984"
		     /translation="SPEVIPMFSALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINEE
		     AAEWDRLHPIHAGPIAPGQVREPRGSDIAGTTSTPQEQIAWMTGNPPIPVGDIYKRWI
		     ILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFKCLRAEQATQEVKGWMTETLLVQ
		     NANPDCKTILRALGAGATLEEMMTACQGVGGPGHKARVLAEAMSQVQHTN"
BASE COUNT	226 a	 122 c	  155 g    127 t
ORIGIN
       1 agtccagaag taatacccat gttttcagca ttatcagaag gagccacccc acaagattta 
      61 aatatgatgc tgaacatagt ggggggacat caggcagcta tgcaaatgct aaaagatacc 
     121 atcaatgagg aagctgcaga gtgggacagg ctacatccaa tccatgcagg gcctattgca 
     181 ccaggccagg taagagaacc aaggggaagt gatatagcag gaaccaccag tacccctcaa 
     241 gaacaaatag catggatgac aggcaaccca cctatcccag tgggagacat ctataaaaga 
     301 tggataatcc tgggattaaa taaaatagta agaatgtata gccctgttag cattttggat 
     361 ataaaacaag gtcctaaaga acccttcaga gactatgtag acaggttctt taaatgtctt 
     421 agagctgagc aagctacaca ggaagtaaaa ggttggatga cggaaacatt actggtccaa 
     481 aatgcaaatc cagattgtaa gaccatttta agagcattag gagcaggggc tacattagaa 
     541 gaaatgatga cagcatgcca gggagtggga ggacccggcc ataaagcaag ggttttggct 
     601 gaggcaatga gtcaagtgca acatacaaac 
//
last modified: Tue May 31 10:56 2022


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