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LOCUS EU698097 404 bp RNA linear VRL 03-JUN-2008
DEFINITION HIV-1 isolate 20463SASA3869XXxxxxxiDDDD1pcHS59XXXX from South
Africa envelope glycoprotein (env) gene, partial cds
ACCESSION EU698097
VERSION EU698097.1 GI:189174011
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 404)
Show all sequences for reference 1
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE HLA class I-driven evolution of human immunodeficiency virus type 1
subtype c proteome: immune escape and viral load.
JOURNAL J. Virol.. 82(13); 6434-46 (2008)
PUBMED 18434400
REFERENCE 2 (bases 1 to 404)
Show all sequences for reference 2
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2008) Dept of Microbiology, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..404
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="20463SASA3869XXxxxxxiDDDD1pcHS59XXXX"
/isolation_source="29418 patient_id 3869 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/PCR_primers="fwd_name: DR7, fwd_seq:
tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
ggtcacttctccaattgtccttcatatttcctc"
gene <1..>404
/gene="env"
CDS <1..>404
/gene="env"
/note="V3V4"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACD81333.1"
/db_xref="GI:189174012"
/translation="IKTIIVHLNESVEIVCTRPNNNTRKSIRIGPGQTFYATNAIIGD
IRQAHCNISRNKWNKTMEQVEKKLKEHFPNKTINFTSPSGGDLEVTTHSFNCKGEFFY
CNTSDLFNKTKYQSNASDTTLTLPCRIKQIIN"
BASE COUNT 184 a 77 c 57 g 86 t
ORIGIN
1 atatcaaaac aataatagta caccttaatg aatctgtaga aattgtgtgt acaagaccca
61 acaataatac aagaaaaagt ataaggatag gaccaggaca aacattctat gcaacaaatg
121 ccataatagg agacataaga caagcacatt gtaacattag taggaacaaa tggaacaaaa
181 caatggaaca ggtagagaaa aaattaaaag aacacttccc taataaaaca ataaacttta
241 cctcaccctc aggaggggat ctagaagtta caacacatag ctttaattgt aaaggagaat
301 tcttttattg caacacatca gacctgttca ataaaacaaa ataccaatct aatgcaagtg
361 acaccacact cacactcccc tgcagaataa aacaaattat aaac
//
last modified: Tue May 31 10:56 2022