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LOCUS	    EU698097		     404 bp    RNA     linear	VRL 03-JUN-2008
DEFINITION  HIV-1 isolate 20463SASA3869XXxxxxxiDDDD1pcHS59XXXX from South
	    Africa envelope glycoprotein (env) gene, partial cds
ACCESSION   EU698097
VERSION     EU698097.1 GI:189174011
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 404)
            Show all sequences for reference 1
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     HLA class I-driven evolution of human immunodeficiency virus type 1
	    subtype c proteome: immune escape and viral load.
  JOURNAL   J. Virol.. 82(13); 6434-46 (2008)
  PUBMED    18434400
REFERENCE   2 (bases 1 to 404)
            Show all sequences for reference 2
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Dept of Microbiology, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..404
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20463SASA3869XXxxxxxiDDDD1pcHS59XXXX"
		     /isolation_source="29418 patient_id 3869 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /PCR_primers="fwd_name: DR7, fwd_seq:
		     tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
		     ggtcacttctccaattgtccttcatatttcctc"
     gene	     <1..>404
		     /gene="env"
     CDS	     <1..>404
		     /gene="env"
		     /note="V3V4"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACD81333.1"
		     /db_xref="GI:189174012"
		     /translation="IKTIIVHLNESVEIVCTRPNNNTRKSIRIGPGQTFYATNAIIGD
		     IRQAHCNISRNKWNKTMEQVEKKLKEHFPNKTINFTSPSGGDLEVTTHSFNCKGEFFY
		     CNTSDLFNKTKYQSNASDTTLTLPCRIKQIIN"
BASE COUNT	184 a	  77 c	   57 g     86 t
ORIGIN
       1 atatcaaaac aataatagta caccttaatg aatctgtaga aattgtgtgt acaagaccca 
      61 acaataatac aagaaaaagt ataaggatag gaccaggaca aacattctat gcaacaaatg 
     121 ccataatagg agacataaga caagcacatt gtaacattag taggaacaaa tggaacaaaa 
     181 caatggaaca ggtagagaaa aaattaaaag aacacttccc taataaaaca ataaacttta 
     241 cctcaccctc aggaggggat ctagaagtta caacacatag ctttaattgt aaaggagaat 
     301 tcttttattg caacacatca gacctgttca ataaaacaaa ataccaatct aatgcaagtg 
     361 acaccacact cacactcccc tgcagaataa aacaaattat aaac
//
last modified: Tue May 31 10:56 2022


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