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LOCUS	    EU698063		     416 bp    RNA     linear	VRL 03-JUN-2008
DEFINITION  HIV-1 isolate 20407SASA3813XXxxxxxiDDDD1pcHS59XXXX from South
	    Africa envelope glycoprotein (env) gene, partial cds
ACCESSION   EU698063
VERSION     EU698063.1 GI:189173943
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 416)
            Show all sequences for reference 1
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     HLA class I-driven evolution of human immunodeficiency virus type 1
	    subtype c proteome: immune escape and viral load.
  JOURNAL   J. Virol.. 82(13); 6434-46 (2008)
  PUBMED    18434400
REFERENCE   2 (bases 1 to 416)
            Show all sequences for reference 2
  AUTHORS   Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
	    Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
	    Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
	    Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
	    Heckerman,D.E., Korber,B.T. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAY-2008) Dept of Microbiology, University of
	    Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES             Location/Qualifiers
     source	     1..416
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="20407SASA3813XXxxxxxiDDDD1pcHS59XXXX"
		     /isolation_source="29362 patient_id 3813 plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /PCR_primers="fwd_name: DR7, fwd_seq:
		     tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
		     ggtcacttctccaattgtccttcatatttcctc"
     gene	     <1..>416
		     /gene="env"
     CDS	     <1..>416
		     /gene="env"
		     /note="V3V4"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACD81299.1"
		     /db_xref="GI:189173944"
		     /translation="AKTIIVQFNKSIEIVCTRHSNNTRKSVRIGPGQTFYATHDIIGD
		     IRKAHCNISGKWNKALQEVSEKLKEHFPNKTISFNAASGGDLEITTHSFNCRGEFFYC
		     NTSRLFNGTYNSTNTSDNSTLNETITIPCRIKQIIN"
BASE COUNT	187 a	  72 c	   67 g     90 t
ORIGIN
       1 atgctaaaac tataatagta cagtttaaca aatccataga aattgtgtgc acaagacaca 
      61 gcaataacac aagaaaaagt gtaaggatag gaccaggaca aacattctat gcaacacatg 
     121 acataatagg agacataaga aaagcacatt gcaatatcag tggaaagtgg aataaagcct 
     181 tacaagaggt aagtgaaaaa ttaaaagaac acttccctaa taaaacaata agctttaacg 
     241 cagcctcagg aggggaccta gaaattacaa cacacagctt taattgtaga ggagaatttt 
     301 tctattgtaa tacatcaaga ctatttaatg gtacatacaa tagtacaaac acatcagata 
     361 atagcacact gaacgagacc atcacaattc catgcagaat aaaacaaatt ataaac
//
last modified: Tue May 31 10:56 2022


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