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LOCUS EU698063 416 bp RNA linear VRL 03-JUN-2008
DEFINITION HIV-1 isolate 20407SASA3813XXxxxxxiDDDD1pcHS59XXXX from South
Africa envelope glycoprotein (env) gene, partial cds
ACCESSION EU698063
VERSION EU698063.1 GI:189173943
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 416)
Show all sequences for reference 1
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE HLA class I-driven evolution of human immunodeficiency virus type 1
subtype c proteome: immune escape and viral load.
JOURNAL J. Virol.. 82(13); 6434-46 (2008)
PUBMED 18434400
REFERENCE 2 (bases 1 to 416)
Show all sequences for reference 2
AUTHORS Rousseau,C.M., Daniels,M.G., Carlson,J.M., Kadie,C., Crawford,H.,
Prendergast,A., Matthews,P., Payne,R., Rolland,M., Raugi,D.N.,
Maust,B.S., Learn,G.H., Nickle,D.C., Coovadia,H., Ndung'u,T.,
Frahm,N., Brander,C., Walker,B.D., Goulder,P.J.R., Bhattacharya,T.,
Heckerman,D.E., Korber,B.T. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2008) Dept of Microbiology, University of
Washington, Campus Box 358070, Seattle, WA 98195, USA
FEATURES Location/Qualifiers
source 1..416
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="20407SASA3813XXxxxxxiDDDD1pcHS59XXXX"
/isolation_source="29362 patient_id 3813 plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/PCR_primers="fwd_name: DR7, fwd_seq:
tcaactcaactgctgttaaatggcagtctagc, rev_name: DR8C, rev_seq:
ggtcacttctccaattgtccttcatatttcctc"
gene <1..>416
/gene="env"
CDS <1..>416
/gene="env"
/note="V3V4"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ACD81299.1"
/db_xref="GI:189173944"
/translation="AKTIIVQFNKSIEIVCTRHSNNTRKSVRIGPGQTFYATHDIIGD
IRKAHCNISGKWNKALQEVSEKLKEHFPNKTISFNAASGGDLEITTHSFNCRGEFFYC
NTSRLFNGTYNSTNTSDNSTLNETITIPCRIKQIIN"
BASE COUNT 187 a 72 c 67 g 90 t
ORIGIN
1 atgctaaaac tataatagta cagtttaaca aatccataga aattgtgtgc acaagacaca
61 gcaataacac aagaaaaagt gtaaggatag gaccaggaca aacattctat gcaacacatg
121 acataatagg agacataaga aaagcacatt gcaatatcag tggaaagtgg aataaagcct
181 tacaagaggt aagtgaaaaa ttaaaagaac acttccctaa taaaacaata agctttaacg
241 cagcctcagg aggggaccta gaaattacaa cacacagctt taattgtaga ggagaatttt
301 tctattgtaa tacatcaaga ctatttaatg gtacatacaa tagtacaaac acatcagata
361 atagcacact gaacgagacc atcacaattc catgcagaat aaaacaaatt ataaac
//
last modified: Tue May 31 10:56 2022