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LOCUS	    EU575019		    2550 bp    DNA     linear	VRL 16-JUN-2008
DEFINITION  HIV-1 isolate 1006.11_C13 from USA envelope glycoprotein (env)
	    gene, complete cds; and vpu protein (vpu), rev protein (rev), and
	    tat protein (tat) genes, partial cds
ACCESSION   EU575019
VERSION     EU575019.1 GI:190171693
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2550)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Giorgi,E.E., Salazar-Gonzalez,J.F., Decker,J.M.,
	    Pham,K.T., Salazar,M.G., Sun,C., Grayson,T., Wang,S., Li,H.,
	    Wei,X., Jiang,C., Kirchherr,J.L., Gao,F., Anderson,J.A., Ping,L.H.,
	    Swanstrom,R., Tomaras,G.D., Blattner,W.A., Goepfert,P.A.,
	    Kilby,J.M., Saag,M.S., Delwart,E.L., Busch,M.P., Cohen,M.S.,
	    Montefiori,D.C., Haynes,B.F., Gaschen,B., Athreya,G.S., Lee,H.Y.,
	    Wood,N., Seoighe,C., Perelson,A.S., Bhattacharya,T., Korber,B.T.,
	    Hahn,B.H. and Shaw,G.M.
  TITLE     Identification and characterization of transmitted and early
	    founder virus envelopes in primary HIV-1 infection
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 105 (21), 7552-7557 (2008)
  PUBMED    18490657
REFERENCE   2 (bases 1 to 2550)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J., Pham,K.T. and Keele,B.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2008) University of Alabama at Birmingham,
	    Department of Medicine, Kaul 806, 720 20th Street South,
	    Birmingham, AL 35294, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wood,N., Bhattacharya,T., Keele,B.F., Giorgi,E., Liu,M.,
	    Gaschen,B., Daniels,M., Ferrari,G., Haynes,B.F., McMichael,A.,
	    Shaw,G.M., Hahn,B.H., Korber,B. and Seoighe,C.
  TITLE     HIV evolution in early infection: selection pressures, patterns of
	    insertion and deletion, and the impact of APOBEC.
  JOURNAL   PLoS. Pathog.. 5(5); e1000414 (2009)
  PUBMED    19424423
COMMENT     Annotation information was provided by the author. Some of
	    theinformation does not have GenBank feature identifiers and is
	    beingprovided in the comment section. Information in this section
	    issearchable in HIV Database at Los Alamos
	    (www.hiv.lanl.gov).##HIVDataBaseData-START##Patient cohort Source
	    Plasma DonorFiebig Stage 3Sequence Name 1006.11_C13Sample tissue
	    plasmaViral Load 1600000Patient sex MSequence Number 1609Risk
	    Factor SPDSubtype BSample Timepoint 11Sample date 06/05/97Patient
	    code 1006Sample city Fayetteville,NCDBID 3375911989Subtype
	    B##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2550
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1006.11_C13"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: B"
     gene	     1..2550
		     /gene="env"
     CDS	     1..2550
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACE64006.1"
		     /db_xref="GI:190171697"
		     /translation="MRVMGIRRNYQHLWRWGIMLLGILMICSAAEKWVTVYYGVPVWK
		     EATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEIVLGNVTENFNMWKNDMVEQM
		     HEDIISLWDQSLKPCVKLTPLCVTLNCTDDLGNNSTNNSSWDKGEMKKCSFNITTSIR
		     GKMQKEYALFYKLDIVPIDNGKNDSTNTSYRLINCNTSVITQACPKITFEPIPIHYCA
		     PAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIVIRSENF
		     TNNAKTIIVQLKESVQINCTRPNNNTRKGIHIGPGRAFYATGQIIGDIKRAYCNISRT
		     KWNNTLIQVVRKLREQFGNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTW
		     NANVTANSTEGNDTLILPCKIKQIINMWQEVGKAMYAPPIQGIISCSSNITGLLLTRD
		     GGSENRPNETFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKAKRRVVQREKRAIGM
		     GALFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGI
		     KQLQARVLALERYLKDQQLLGMWGCSGKLICTTTVPWNDSWSNKSLSDIWDNMTWMEW
		     EREINNYTSLIYTLIQESQSQQEKNELELLALDKWASLWNWFDISKWLWYIKIFIMIV
		     GGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDTSRQ
		     LAAGFLALLWVDLRSLCLFLYHRLRDLLLIVARIVELLGRRGWEALKYWWNLLQYWSQ
		     ELKNSAVSLFNATAIAVAEGTDRIIEAVQRTLRAIRHIPTRIRQGFERALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ACE64005.1"
		     /db_xref="GI:190171696"
		     /translation="ESDGDQEELSTLMEMGHHAPWDIDDL"
     gene	     <2134..2408
		     /gene="rev"
     CDS	     <2134..2408
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACE64004.1"
		     /db_xref="GI:190171695"
		     /translation="PPPSSKGTRQARRNRRRRWRERQRHIQAISSWILSTSLGRPTEP
		     VPLPLPPLERLTLDCSEDCGTSGTQGVGSPQVLVESPAVLESGTKE"
     gene	     <2134..2224
		     /gene="tat"
     CDS	     <2134..2224
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ACE64003.1"
		     /db_xref="GI:190171694"
		     /translation="PTSQLQGDPTGPKESKKKVERETETHPGN"
BASE COUNT	894 a	 443 c	  595 g    618 t
ORIGIN
       1 atgagagtga tggggatcag gaggaattat caacacttat ggagatgggg catcatgctc 
      61 cttgggatat tgatgatctg tagtgctgca gagaaatggg tcacagtcta ttatggggta 
     121 cctgtgtgga aagaagcaac caccactcta ttttgtgcat cagatgctaa agcatatgat 
     181 acagaggtac ataatgtttg ggccacacat gcctgtgtac ccacagaccc caacccacaa 
     241 gaaatagtat tgggaaatgt gacagaaaat tttaacatgt ggaaaaatga catggtagaa 
     301 caaatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg tgtaaaatta 
     361 actccactct gtgttacttt aaattgcact gatgatttgg ggaataatag tactaacaac 
     421 agtagttggg acaagggaga gatgaaaaaa tgctctttca atatcaccac aagcataaga 
     481 ggtaagatgc agaaagaata tgcacttttt tataaacttg atatagtacc aatagataat 
     541 ggtaagaatg atagtaccaa taccagctat aggttgataa actgtaacac ctcagtcatt 
     601 acacaggcct gtccaaagat aacctttgag ccaattccaa tacattactg tgccccggct 
     661 ggttttgcga ttctaaagtg taacaataag acgttcaatg gaacaggacc atgtacaaat 
     721 gtcagcacag tacaatgtac acatggaatt aagccagtag tgtcaactca actgctgtta 
     781 aatggcagtc tagcagaaga agatatagta attagatctg agaatttcac gaacaatgct 
     841 aaaaccataa tagtacagct gaaagaatct gtacaaatta attgtacaag acctaacaac 
     901 aatacaagaa aaggtataca tataggacca gggagagcat tttatgcaac aggacaaata 
     961 ataggagata taaaaagagc atattgtaac attagtagaa caaagtggaa caacacttta 
    1021 atacaggtag ttagaaaatt aagagaacaa tttgggaata aaacaatagt ctttaatcaa 
    1081 tcctcaggag gggacccaga aattgtaatg cacagcttta attgtggagg ggaatttttc 
    1141 tactgtaata caacacaact gtttaatagt acttggaatg ctaatgttac tgcaaatagc 
    1201 acggaaggaa atgacaccct catactccca tgcaaaataa aacaaattat aaacatgtgg 
    1261 caagaggtag gaaaagcaat gtatgcccct cccatccaag ggataattag ctgttcatca 
    1321 aatatcacag ggctattatt aacaagagat ggtggaagtg aaaacaggcc taacgagacc 
    1381 ttcagacctg gaggaggaga tatgagggac aattggagaa gtgaattata taaatataaa 
    1441 gtagtacaaa ttgaaccact aggagtagca cccaccaagg caaaaagaag agtggtgcag 
    1501 agagaaaaaa gagcaatagg aatgggagcg ttgttccttg ggttcttggg agcagcagga 
    1561 agcactatgg gcgcagcgtc agtgacgctg acggtacagg ccagacaatt attgtctggt 
    1621 atagtgcaac agcaaaacaa tttgctgaag gctattgagg cgcaacagca tctgttgcaa 
    1681 ctcacagtct ggggcatcaa gcagctccag gcaagagtcc tggctttgga aagataccta 
    1741 aaggatcaac agctcctagg gatgtggggt tgctctggaa aactcatctg caccactact 
    1801 gtgccttgga atgatagttg gagtaataaa tctctaagtg atatttggga taacatgacc 
    1861 tggatggagt gggaaagaga aattaacaat tacacaagtt taatatacac cttaattcaa 
    1921 gaatcgcaga gccaacaaga aaaaaatgaa ctagaattat tggcattgga taagtgggca 
    1981 agcctgtgga attggtttga catatcaaaa tggctgtggt atataaaaat attcataatg 
    2041 atagtaggag gcttaatagg tttaagaata gtttttactg tgctttctat agtgaataga 
    2101 gttaggcagg gatactcacc attgtcattt cagacccacc tcccagctcc aaggggaccc 
    2161 gacaggcccg aaggaatcga agaagaaggt ggagagagag acagagacac atccaggcaa 
    2221 ttagcagctg gattcttagc acttctctgg gtcgacctac ggagcctgtg cctcttcctc 
    2281 taccaccgct tgagagactt actcttgatt gtagcgagga ttgtggaact tctgggacgc 
    2341 agggggtggg aagccctcaa gtattggtgg aatctcctgc agtattggag tcaggaacta 
    2401 aagaatagtg ctgttagctt gttcaatgct acagcaatag cagtagctga ggggacagat 
    2461 aggattatag aagcagtaca aagaactctt agagctattc gccacatacc tacaagaata 
    2521 agacagggct ttgaaagggc tttgctataa 
//
last modified: Tue May 31 10:56 2022


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