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LOCUS	    EU574952		    2568 bp    DNA     linear	VRL 16-JUN-2008
DEFINITION  HIV-1 isolate 1001.07_A21 from USA envelope glycoprotein (env)
	    gene, complete cds; vpu protein (vpu) and rev protein (rev) genes,
	    partial cds; and tat pseudogene, partial sequence
ACCESSION   EU574952
VERSION     EU574952.1 GI:190171415
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2568)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Giorgi,E.E., Salazar-Gonzalez,J.F., Decker,J.M.,
	    Pham,K.T., Salazar,M.G., Sun,C., Grayson,T., Wang,S., Li,H.,
	    Wei,X., Jiang,C., Kirchherr,J.L., Gao,F., Anderson,J.A., Ping,L.H.,
	    Swanstrom,R., Tomaras,G.D., Blattner,W.A., Goepfert,P.A.,
	    Kilby,J.M., Saag,M.S., Delwart,E.L., Busch,M.P., Cohen,M.S.,
	    Montefiori,D.C., Haynes,B.F., Gaschen,B., Athreya,G.S., Lee,H.Y.,
	    Wood,N., Seoighe,C., Perelson,A.S., Bhattacharya,T., Korber,B.T.,
	    Hahn,B.H. and Shaw,G.M.
  TITLE     Identification and characterization of transmitted and early
	    founder virus envelopes in primary HIV-1 infection
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 105 (21), 7552-7557 (2008)
  PUBMED    18490657
REFERENCE   2 (bases 1 to 2568)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J., Pham,K.T. and Keele,B.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2008) University of Alabama at Birmingham,
	    Department of Medicine, Kaul 806, 720 20th Street South,
	    Birmingham, AL 35294, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wood,N., Bhattacharya,T., Keele,B.F., Giorgi,E., Liu,M.,
	    Gaschen,B., Daniels,M., Ferrari,G., Haynes,B.F., McMichael,A.,
	    Shaw,G.M., Hahn,B.H., Korber,B. and Seoighe,C.
  TITLE     HIV evolution in early infection: selection pressures, patterns of
	    insertion and deletion, and the impact of APOBEC.
  JOURNAL   PLoS. Pathog.. 5(5); e1000414 (2009)
  PUBMED    19424423
COMMENT     Annotation information was provided by the author. Some of
	    theinformation does not have GenBank feature identifiers and is
	    beingprovided in the comment section. Information in this section
	    issearchable in HIV Database at Los Alamos
	    (www.hiv.lanl.gov).##HIVDataBaseData-START##Patient cohort Source
	    Plasma DonorFiebig Stage 3Sequence Name 1001.07_A21Sample tissue
	    plasmaViral Load 210000Patient sex FSequence Number 2245Risk Factor
	    SPDSubtype BSample Timepoint 07Sample date 02/12/97Patient code
	    1001Sample city St.Louis,MODBID 3557208013Subtype
	    B##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2568
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1001.07_A21"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /note="subtype: B"
     gene	     1..2568
		     /gene="env"
     CDS	     1..2568
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ACE63794.1"
		     /db_xref="GI:190171418"
		     /translation="MRVKGIKKNYQHWWRWGTMLTMLLGILMICSANEKLWVTVYYGV
		     PVWKEATTTLFCASDAKAYKTEVHNVWATHACVPTDPNPQEVVMKNVTENYNMWKNNM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLPNGNYTNNGSVGAMEKGEMKNCSF
		     KVTTHMRDKMQKEYALLYKLDIIQTEDNSSYRLISCNTSSVTQACPKVSFEPIPIHYC
		     APAGFAILKCNQKNFTGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSEN
		     FTNSAKIIIVQLKETVKIDCTRPNNNTRKSINIGPGRAFYATGEIIGDIRQAHCNLSG
		     TLWNKTLHQIAKKLGEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNTTQLFGST
		     WEFNSTWNATNNSTGNDTITLPCRIKQFINMWQEVGKAMYAPPIKGPIKCLSNITGIL
		     LTRDGGNGNNTTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKR
		     AVLGGLGAVFIGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQSNLLRAIEAQQHLLQ
		     LTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTSVPWNASWSNKSLDKIWNN
		     MTWMEWEKEIDNYTGLIYSLIEESQNQQEKNEQELLELDKWASLWNWFNITHWLWYIK
		     IFIIIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPTPRGPDRPEGIEEEGGERD
		     KDRSVRLVDGFLALIWDDLRSLCLFSYHHLRDLLLTVTRIVELLGRRGWEALKYWWNL
		     LQYWSQELKSSAISLLNATAIAVAEGTDRVIEIVQRACRAILHIPRRIRQGLERLLL"
     gene	     <1..92
		     /gene="vpu"
     CDS	     <1..92
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ACE63793.1"
		     /db_xref="GI:190171417"
		     /translation="ESEGDQEELSALVEMGHYAHHAPWDINDL"
     gene	     <2152..2426
		     /gene="rev"
     CDS	     <2152..2426
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ACE63792.1"
		     /db_xref="GI:190171416"
		     /translation="PPPNPEGTRQARRNRRRRWRERQRQIREISGWILSTYLGRSAEP
		     VPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE"
     gene	     <2152..2242
		     /gene="tat"
     CDS	     <2152..2242
		     /gene="tat"
		     /pseudo="tat"
		     /codon_start="1"
		     /transl_table="1"
BASE COUNT	909 a	 442 c	  598 g    619 t
ORIGIN
       1 atgagagtga aggggatcaa gaagaattat cagcactggt ggagatgggg cactatgctc 
      61 accatgctcc ttgggatatt aatgatctgt agtgctaatg aaaaattgtg ggtcacagtc 
     121 tattatgggg tacctgtgtg gaaggaagca accaccactc tattttgtgc atcagatgct 
     181 aaagcataca aaacagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccaacccac aagaagtagt aatgaaaaat gtgacagaaa attataacat gtggaaaaat 
     301 aacatggtag aacaaatgca tgaggatata atcagtttat gggatcaaag tctaaagcca 
     361 tgtgtaaaat taaccccact ctgtgttact ttaaattgca ctgacttacc gaatggtaat 
     421 tataccaata atggtagcgt gggagcaatg gagaaaggag aaatgaaaaa ctgctctttt 
     481 aaagttacca cacacatgag agataagatg caaaaagaat atgcattgtt gtataaactt 
     541 gatataatac aaacagagga taattccagc tacaggttga taagttgtaa cacctcaagt 
     601 gttacacaag cctgtccaaa ggtatccttt gagccaattc ccatacatta ttgtgccccg 
     661 gctggttttg cgattctaaa gtgtaatcaa aagaacttca ctggaacagg accatgtaca 
     721 aatgtcagca cagtacaatg tacacatgga attaggccag tagtatcaac tcaactgctg 
     781 ttaaatggca gtctagcaga agaagaggta gtaattagat ctgaaaattt cacaaacagt 
     841 gctaaaatca taatagtaca actgaaagaa actgtaaaaa ttgattgtac aagacccaac 
     901 aacaatacaa gaaaaagtat aaatatagga ccagggagag cattttatgc aacaggagaa 
     961 ataataggag atataagaca agcacattgt aaccttagtg ggacactatg gaataaaact 
    1021 ttacatcaga tagctaaaaa attaggagaa caatttggga ataaaacaat agtctttaat 
    1081 cactcctcag gaggggaccc agaaattgta atgcacagtt ttaattgtgg aggggaattt 
    1141 ttctattgta atacaacaca actgtttggt agtacttggg agtttaatag tacttggaat 
    1201 gctaccaata acagtacagg aaatgacaca atcacactcc catgcagaat aaaacaattt 
    1261 ataaacatgt ggcaagaagt aggaaaagca atgtatgccc ctcccatcaa aggaccaatt 
    1321 aaatgtttat caaatattac agggatacta ttaacaagag atggaggtaa tggtaataac 
    1381 acgaccgaga tcttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta 
    1441 tataaatata aagtagtaaa gattgaaccc ttaggagtag cacccactag ggcaaagaga 
    1501 agagtggtgc agagagaaaa aagagcagta ctagggggac tcggagctgt gttcattggg 
    1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag taacgctgac ggtacaggcc 
    1621 agacaactac tgtctggtat agtgcaacag cagagcaatc tgctgagagc tattgaggcg 
    1681 caacagcatc tgttgcaact cacagtctgg ggcatcaagc agctccaggc aagagtccta 
    1741 gctgtagaaa gatacctaaa ggatcaacag ctcctgggaa tttggggttg ctctggaaaa 
    1801 ctcatctgca ccacttctgt gccttggaat gctagttgga gtaataaatc tctggataag 
    1861 atttggaata acatgacctg gatggagtgg gaaaaagaaa ttgataatta cacaggctta 
    1921 atatattcct taattgaaga atcacaaaac caacaagaaa agaatgaaca agaattatta 
    1981 gaattggata aatgggcaag tttgtggaat tggtttaaca taacacactg gctgtggtat 
    2041 ataaaaatat tcataataat agtaggaggc ttagtaggtc taagaatagt ttttgctgta 
    2101 ctttctatag tgaatagagt taggcaggga tactcaccat tatcgtttca gacccgcctc 
    2161 ccaaccccga ggggacccga caggcccgaa ggaatcgaag aagaaggtgg agagagagac 
    2221 aaagacagat ccgtgagatt agtggatgga ttcttagcac ttatctggga cgatctgcgg 
    2281 agcctgtgcc tcttcagcta ccaccacttg agagacttac tcttgactgt aacgaggatt 
    2341 gtggaacttc tgggacgcag ggggtgggaa gccctcaaat attggtggaa tctcctacag 
    2401 tattggagtc aggaactaaa gagtagtgct attagcttgc tcaacgccac agcgatagca 
    2461 gtagctgagg gaacagatag ggttatagaa atagtacaaa gagcctgtag agctattctc 
    2521 cacataccta gaagaataag acagggcttg gaaaggcttt tgctataa
//
last modified: Tue May 31 10:56 2022


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