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LOCUS EU347488 693 bp RNA linear VRL 13-MAR-2008
DEFINITION HIV-1 isolate CAP088_2_00 clone 07 from South Africa gag protein
(gag) gene, partial cds
ACCESSION EU347488
VERSION EU347488.1 GI:164605853
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 693)
Show all sequences for reference 1
AUTHORS Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
Gray,C.M. and Williamson,C.
CONSRTM CAPRISA 002 Study Team
TITLE Transmission of HIV-1 CTL escape variants provides HLA-mismatched
recipients with a survival advantage
JOURNAL PLoS Pathog. 4 (3), E1000033 (2008)
PUBMED 18369479
REFERENCE 2 (bases 1 to 693)
Show all sequences for reference 2
AUTHORS Chopera,D.R., Treurnicht,F. and Williamson,C.
CONSRTM Centre for the AIDS Program of Research in South Africa
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2007) Institute of Infectious Diseases and
Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
7925, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
TITLE Virological and Immunological Factors Associated with HIV-1
Differential Disease Progression in HLA-B*58:01-Positive
Individuals
JOURNAL J. Virol. 85 (14), 7070-7080 (2011)
PUBMED 21613398
FEATURES Location/Qualifiers
source 1..693
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP088_2_00"
/db_xref="taxon:11676"
/clone="07"
/country="South Africa"
/collection_date="2005"
/note="subtype: C"
gene <1..>693
/gene="gag"
CDS <1..>693
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY62076.1"
/db_xref="GI:164605854"
/translation="PIVQNPQGQMVHHPISPRTLNAWVKVIEEKGFSPEVIPMFTALS
EGATSHDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPNPPGQMREPRGS
DIAGTTSNLQEQIAWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
FRDYVDRFFKTLKAEQATQDVKNWMTDTLLVQNANPDCKTILRALGSGATLEEMMTAC
QGVGGPSHKARVL"
BASE COUNT 250 a 131 c 164 g 148 t
ORIGIN
1 cctatagtgc agaatcctca agggcaaatg gtacatcacc ccatatcacc tagaaccttg
61 aatgcatggg taaaagtaat agaggagaag ggttttagcc cagaggtaat acccatgttt
121 acagcattat cagaaggagc cacctcacac gatttaaaca ccatgctaaa tacggtgggg
181 ggacatcaag cagccatgca aatgttaaaa gataccatca atgaagaggc tgcagaatgg
241 gatagattac atccagtcca tgcggggcct aatccaccag gccaaatgag ggaaccaagg
301 ggaagtgaca tagcaggaac tactagtaac cttcaggaac aaatagcatg gatgacaggt
361 aacccaccta ttccagtagg agacatctat aaaagatgga taattctagg gttaaataaa
421 atagtgagaa tgtatagccc tgttagcatt ttggacataa aacaagggcc aaaggaacct
481 tttagagact atgtagatcg gttctttaaa actttaaaag ctgaacaagc tacacaagat
541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg cgaacccaga ttgtaagacc
601 attttaagag cattaggatc aggggctaca ttagaagaaa tgatgacagc atgtcaggga
661 gtgggagggc ctagccacaa agcaagagtg ttg
//
last modified: Tue May 31 10:56 2022