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LOCUS	    EU347488		     693 bp    RNA     linear	VRL 13-MAR-2008
DEFINITION  HIV-1 isolate CAP088_2_00 clone 07 from South Africa gag protein
	    (gag) gene, partial cds
ACCESSION   EU347488
VERSION     EU347488.1 GI:164605853
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 693)
            Show all sequences for reference 1
  AUTHORS   Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
	    Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
	    Gray,C.M. and Williamson,C.
  CONSRTM   CAPRISA 002 Study Team
  TITLE     Transmission of HIV-1 CTL escape variants provides HLA-mismatched
	    recipients with a survival advantage
  JOURNAL   PLoS Pathog. 4 (3), E1000033 (2008)
  PUBMED    18369479
REFERENCE   2 (bases 1 to 693)
            Show all sequences for reference 2
  AUTHORS   Chopera,D.R., Treurnicht,F. and Williamson,C.
  CONSRTM   Centre for the AIDS Program of Research in South Africa
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2007) Institute of Infectious Diseases and
	    Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
	    3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
	    7925, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
	    Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
  TITLE     Virological and Immunological Factors Associated with HIV-1
	    Differential Disease Progression in HLA-B*58:01-Positive
	    Individuals
  JOURNAL   J. Virol. 85 (14), 7070-7080 (2011)
  PUBMED    21613398
FEATURES             Location/Qualifiers
     source	     1..693
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP088_2_00"
		     /db_xref="taxon:11676"
		     /clone="07"
		     /country="South Africa"
		     /collection_date="2005"
		     /note="subtype: C"
     gene	     <1..>693
		     /gene="gag"
     CDS	     <1..>693
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY62076.1"
		     /db_xref="GI:164605854"
		     /translation="PIVQNPQGQMVHHPISPRTLNAWVKVIEEKGFSPEVIPMFTALS
		     EGATSHDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPNPPGQMREPRGS
		     DIAGTTSNLQEQIAWMTGNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
		     FRDYVDRFFKTLKAEQATQDVKNWMTDTLLVQNANPDCKTILRALGSGATLEEMMTAC
		     QGVGGPSHKARVL"
BASE COUNT	250 a	 131 c	  164 g    148 t
ORIGIN
       1 cctatagtgc agaatcctca agggcaaatg gtacatcacc ccatatcacc tagaaccttg 
      61 aatgcatggg taaaagtaat agaggagaag ggttttagcc cagaggtaat acccatgttt 
     121 acagcattat cagaaggagc cacctcacac gatttaaaca ccatgctaaa tacggtgggg 
     181 ggacatcaag cagccatgca aatgttaaaa gataccatca atgaagaggc tgcagaatgg 
     241 gatagattac atccagtcca tgcggggcct aatccaccag gccaaatgag ggaaccaagg 
     301 ggaagtgaca tagcaggaac tactagtaac cttcaggaac aaatagcatg gatgacaggt 
     361 aacccaccta ttccagtagg agacatctat aaaagatgga taattctagg gttaaataaa 
     421 atagtgagaa tgtatagccc tgttagcatt ttggacataa aacaagggcc aaaggaacct 
     481 tttagagact atgtagatcg gttctttaaa actttaaaag ctgaacaagc tacacaagat 
     541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg cgaacccaga ttgtaagacc 
     601 attttaagag cattaggatc aggggctaca ttagaagaaa tgatgacagc atgtcaggga 
     661 gtgggagggc ctagccacaa agcaagagtg ttg
//
last modified: Tue May 31 10:56 2022


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