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LOCUS	    EU347456		     693 bp    RNA     linear	VRL 13-MAR-2008
DEFINITION  HIV-1 isolate CAP085_2_00 clone 17 from South Africa gag protein
	    (gag) gene, partial cds
ACCESSION   EU347456
VERSION     EU347456.1 GI:164605789
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 693)
            Show all sequences for reference 1
  AUTHORS   Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
	    Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
	    Gray,C.M. and Williamson,C.
  CONSRTM   CAPRISA 002 Study Team
  TITLE     Transmission of HIV-1 CTL escape variants provides HLA-mismatched
	    recipients with a survival advantage
  JOURNAL   PLoS Pathog. 4 (3), E1000033 (2008)
  PUBMED    18369479
REFERENCE   2 (bases 1 to 693)
            Show all sequences for reference 2
  AUTHORS   Chopera,D.R., Treurnicht,F. and Williamson,C.
  CONSRTM   Centre for the AIDS Program of Research in South Africa
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2007) Institute of Infectious Diseases and
	    Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
	    3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
	    7925, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
	    Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
  TITLE     Virological and Immunological Factors Associated with HIV-1
	    Differential Disease Progression in HLA-B*58:01-Positive
	    Individuals
  JOURNAL   J. Virol. 85 (14), 7070-7080 (2011)
  PUBMED    21613398
FEATURES             Location/Qualifiers
     source	     1..693
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP085_2_00"
		     /db_xref="taxon:11676"
		     /clone="17"
		     /country="South Africa"
		     /collection_date="2005"
		     /note="subtype: C"
     gene	     <1..>693
		     /gene="gag"
     CDS	     <1..>693
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY62044.1"
		     /db_xref="GI:164605790"
		     /translation="PIVQNIQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALS
		     EGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRIHPVHAGPVAPGQLREPRGS
		     DIAGTTSNLQEQIAWMTANPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
		     FRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRALGPGATLEEMMTAC
		     QGVGGPGHKARVL"
BASE COUNT	250 a	 135 c	  164 g    144 t
ORIGIN
       1 cctatagtgc agaatattca agggcaaatg gtacaccagc ccctatcacc tagaactttg 
      61 aatgcatggg taaaagtaat agaggagaag gcttttagcc cagaggtaat acccatgttt 
     121 acagcattat cagaaggagc caccccacaa gatttgaaca ccatgttaaa cacagtggga 
     181 ggacatcaag cagccatgca gatgttaaaa gacaccatta atgaggaggc tgcagaatgg 
     241 gacagaatac atccagtaca tgcagggcct gttgcaccag gccaattaag agaaccaagg 
     301 ggaagtgaca tagcaggaac tactagtaac cttcaggaac agatagcatg gatgacagct 
     361 aacccacctg tcccagtggg agaaatctat aaaagatgga taattctggg tttaaataaa 
     421 atagtaagaa tgtacagccc tgtcagcatt ttggacataa aacagggacc aaaggaaccc 
     481 tttagagact atgtagaccg gttctttaaa actttaagag ctgaacaagc tacacaagag 
     541 gtaaaaaatt ggatgacaga caccttgtta gtccaaaatg caaacccaga ttgtaagacc 
     601 attttaagag ccttaggacc aggggctaca ttagaagaaa tgatgacagc atgtcaagga 
     661 gtgggagggc ctggccataa agcaagagtt ttg
//
last modified: Tue May 31 10:56 2022


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