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LOCUS	    EU347435		     693 bp    RNA     linear	VRL 13-MAR-2008
DEFINITION  HIV-1 isolate CAP061_4_20 clone 03 from South Africa gag protein
	    (gag) gene, partial cds
ACCESSION   EU347435
VERSION     EU347435.1 GI:164605747
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 693)
            Show all sequences for reference 1
  AUTHORS   Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
	    Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
	    Gray,C.M. and Williamson,C.
  CONSRTM   CAPRISA 002 Study Team
  TITLE     Transmission of HIV-1 CTL escape variants provides HLA-mismatched
	    recipients with a survival advantage
  JOURNAL   PLoS Pathog. 4 (3), E1000033 (2008)
  PUBMED    18369479
REFERENCE   2 (bases 1 to 693)
            Show all sequences for reference 2
  AUTHORS   Chopera,D.R., Treurnicht,F. and Williamson,C.
  CONSRTM   Centre for the AIDS Program of Research in South Africa
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2007) Institute of Infectious Diseases and
	    Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
	    3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
	    7925, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
	    Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
  TITLE     Virological and Immunological Factors Associated with HIV-1
	    Differential Disease Progression in HLA-B*58:01-Positive
	    Individuals
  JOURNAL   J. Virol. 85 (14), 7070-7080 (2011)
  PUBMED    21613398
FEATURES             Location/Qualifiers
     source	     1..693
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP061_4_20"
		     /db_xref="taxon:11676"
		     /clone="03"
		     /country="South Africa"
		     /collection_date="2006"
		     /note="subtype: C"
     gene	     <1..>693
		     /gene="gag"
     CDS	     <1..>693
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY62023.1"
		     /db_xref="GI:164605748"
		     /translation="PIVPNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFTALS
		     EGATPQDLNTMFNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPVAPGQMREPRGS
		     DIAGATSTLQEQIAWITGNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
		     FRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILKALGTGATLEEMMTAC
		     QGVGGPSHKARVL"
BASE COUNT	246 a	 135 c	  170 g    142 t
ORIGIN
       1 cctatagtgc cgaatctcca agggcagatg gtacatcagc ccatatcacc tagaacattg 
      61 aatgcatggg taaaagtaat agaggagaag gcttttagcc cagaggtaat acccatgttt 
     121 acagcattat cagaaggagc caccccacaa gatttaaaca ccatgttcaa tacggtgggg 
     181 ggacatcaag cagccatgca aatgttaaaa gataccatta atgaagaggc tgcagaatgg 
     241 gataggttac atccagtaca ggcggggcct gttgcaccag gccaaatgag agaaccaagg 
     301 ggaagtgata tagcaggagc tactagtacc cttcaggaac aaatagcatg gataacaggt 
     361 aacccaccta ttccagtggg agaaatctat aaaagatgga taattctggg gctaaataag 
     421 atagtgagaa tgtatagccc tgtcagcatc ttggacataa aacaagggcc aaaggaaccc 
     481 tttagagact atgtagaccg gttctttaaa actttaagag ccgaacaagc tacacaagac 
     541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg cgaacccaga ttgtaagacc 
     601 attttaaaag cattaggaac cggggctaca ttagaagaaa tgatgacagc atgtcaagga 
     661 gtgggaggac ctagccacaa agcaagggtg ttg
//
last modified: Tue May 31 10:56 2022


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