View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU347435 693 bp RNA linear VRL 13-MAR-2008
DEFINITION HIV-1 isolate CAP061_4_20 clone 03 from South Africa gag protein
(gag) gene, partial cds
ACCESSION EU347435
VERSION EU347435.1 GI:164605747
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 693)
Show all sequences for reference 1
AUTHORS Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
Gray,C.M. and Williamson,C.
CONSRTM CAPRISA 002 Study Team
TITLE Transmission of HIV-1 CTL escape variants provides HLA-mismatched
recipients with a survival advantage
JOURNAL PLoS Pathog. 4 (3), E1000033 (2008)
PUBMED 18369479
REFERENCE 2 (bases 1 to 693)
Show all sequences for reference 2
AUTHORS Chopera,D.R., Treurnicht,F. and Williamson,C.
CONSRTM Centre for the AIDS Program of Research in South Africa
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2007) Institute of Infectious Diseases and
Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
7925, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
TITLE Virological and Immunological Factors Associated with HIV-1
Differential Disease Progression in HLA-B*58:01-Positive
Individuals
JOURNAL J. Virol. 85 (14), 7070-7080 (2011)
PUBMED 21613398
FEATURES Location/Qualifiers
source 1..693
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP061_4_20"
/db_xref="taxon:11676"
/clone="03"
/country="South Africa"
/collection_date="2006"
/note="subtype: C"
gene <1..>693
/gene="gag"
CDS <1..>693
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY62023.1"
/db_xref="GI:164605748"
/translation="PIVPNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFTALS
EGATPQDLNTMFNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPVAPGQMREPRGS
DIAGATSTLQEQIAWITGNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
FRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILKALGTGATLEEMMTAC
QGVGGPSHKARVL"
BASE COUNT 246 a 135 c 170 g 142 t
ORIGIN
1 cctatagtgc cgaatctcca agggcagatg gtacatcagc ccatatcacc tagaacattg
61 aatgcatggg taaaagtaat agaggagaag gcttttagcc cagaggtaat acccatgttt
121 acagcattat cagaaggagc caccccacaa gatttaaaca ccatgttcaa tacggtgggg
181 ggacatcaag cagccatgca aatgttaaaa gataccatta atgaagaggc tgcagaatgg
241 gataggttac atccagtaca ggcggggcct gttgcaccag gccaaatgag agaaccaagg
301 ggaagtgata tagcaggagc tactagtacc cttcaggaac aaatagcatg gataacaggt
361 aacccaccta ttccagtggg agaaatctat aaaagatgga taattctggg gctaaataag
421 atagtgagaa tgtatagccc tgtcagcatc ttggacataa aacaagggcc aaaggaaccc
481 tttagagact atgtagaccg gttctttaaa actttaagag ccgaacaagc tacacaagac
541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg cgaacccaga ttgtaagacc
601 attttaaaag cattaggaac cggggctaca ttagaagaaa tgatgacagc atgtcaagga
661 gtgggaggac ctagccacaa agcaagggtg ttg
//
last modified: Tue May 31 10:56 2022