HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EU347419		     693 bp    RNA     linear	VRL 13-MAR-2008
DEFINITION  HIV-1 isolate CAP061_2_00 clone 17 from South Africa gag protein
	    (gag) gene, partial cds
ACCESSION   EU347419
VERSION     EU347419.1 GI:164605715
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 693)
            Show all sequences for reference 1
  AUTHORS   Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
	    Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
	    Gray,C.M. and Williamson,C.
  CONSRTM   CAPRISA 002 Study Team
  TITLE     Transmission of HIV-1 CTL escape variants provides HLA-mismatched
	    recipients with a survival advantage
  JOURNAL   PLoS Pathog. 4 (3), E1000033 (2008)
  PUBMED    18369479
REFERENCE   2 (bases 1 to 693)
            Show all sequences for reference 2
  AUTHORS   Chopera,D.R., Treurnicht,F. and Williamson,C.
  CONSRTM   Centre for the AIDS Program of Research in South Africa
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2007) Institute of Infectious Diseases and
	    Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
	    3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
	    7925, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
	    Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
  TITLE     Virological and Immunological Factors Associated with HIV-1
	    Differential Disease Progression in HLA-B*58:01-Positive
	    Individuals
  JOURNAL   J. Virol. 85 (14), 7070-7080 (2011)
  PUBMED    21613398
FEATURES             Location/Qualifiers
     source	     1..693
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CAP061_2_00"
		     /db_xref="taxon:11676"
		     /clone="17"
		     /country="South Africa"
		     /collection_date="2004"
		     /note="subtype: C"
     gene	     <1..>693
		     /gene="gag"
     CDS	     <1..>693
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY62007.1"
		     /db_xref="GI:164605716"
		     /translation="PIVQNAQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFTALS
		     EGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPVAPGQIREPRGS
		     DIAGTTSNLQEQIAWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
		     FRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGATLEEMMTAC
		     QGVGGPSHKARVL"
BASE COUNT	252 a	 133 c	  166 g    142 t
ORIGIN
       1 cctatagtgc agaatgctca agggcaaatg gtacatcagc ccatatcacc tagaaccttg 
      61 aatgcatggg taaaagtaat agaggagaag gcttttagcc cagaagtaat acccatgttt 
     121 acagcattat cagaaggagc caccccacaa gatttaaaca ccatgttaaa tacagtgggg 
     181 ggacatcaag cagccatgca gatgttaaaa gataccatca atgaggaggc tgcagaatgg 
     241 gatagattac atccagtaca agcggggcct gttgcaccag gccaaataag ggagcctagg 
     301 ggaagtgaca tagcaggaac tactagtaac cttcaggaac aaatagcatg gatgacacat 
     361 aacccaccga tcccagtggg agaaatttat aaaagatgga taattctggg attaaataaa 
     421 atagtaagaa tgtatagccc tgtcagcatt ttggacataa aacaagggcc aaaggaaccc 
     481 tttagagact atgtagaccg gttctttaaa actctaagag ccgaacaagc tacacaagat 
     541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg cgaacccaga ttgtaagacc 
     601 attttaagag cattaggacc aggggctaca ttagaagaaa tgatgacagc atgtcaggga 
     661 gtgggaggac ctagccacaa agcaagagtg ttg
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.