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LOCUS EU347419 693 bp RNA linear VRL 13-MAR-2008
DEFINITION HIV-1 isolate CAP061_2_00 clone 17 from South Africa gag protein
(gag) gene, partial cds
ACCESSION EU347419
VERSION EU347419.1 GI:164605715
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 693)
Show all sequences for reference 1
AUTHORS Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
Gray,C.M. and Williamson,C.
CONSRTM CAPRISA 002 Study Team
TITLE Transmission of HIV-1 CTL escape variants provides HLA-mismatched
recipients with a survival advantage
JOURNAL PLoS Pathog. 4 (3), E1000033 (2008)
PUBMED 18369479
REFERENCE 2 (bases 1 to 693)
Show all sequences for reference 2
AUTHORS Chopera,D.R., Treurnicht,F. and Williamson,C.
CONSRTM Centre for the AIDS Program of Research in South Africa
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2007) Institute of Infectious Diseases and
Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
7925, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
TITLE Virological and Immunological Factors Associated with HIV-1
Differential Disease Progression in HLA-B*58:01-Positive
Individuals
JOURNAL J. Virol. 85 (14), 7070-7080 (2011)
PUBMED 21613398
FEATURES Location/Qualifiers
source 1..693
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP061_2_00"
/db_xref="taxon:11676"
/clone="17"
/country="South Africa"
/collection_date="2004"
/note="subtype: C"
gene <1..>693
/gene="gag"
CDS <1..>693
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY62007.1"
/db_xref="GI:164605716"
/translation="PIVQNAQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFTALS
EGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPVAPGQIREPRGS
DIAGTTSNLQEQIAWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
FRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGATLEEMMTAC
QGVGGPSHKARVL"
BASE COUNT 252 a 133 c 166 g 142 t
ORIGIN
1 cctatagtgc agaatgctca agggcaaatg gtacatcagc ccatatcacc tagaaccttg
61 aatgcatggg taaaagtaat agaggagaag gcttttagcc cagaagtaat acccatgttt
121 acagcattat cagaaggagc caccccacaa gatttaaaca ccatgttaaa tacagtgggg
181 ggacatcaag cagccatgca gatgttaaaa gataccatca atgaggaggc tgcagaatgg
241 gatagattac atccagtaca agcggggcct gttgcaccag gccaaataag ggagcctagg
301 ggaagtgaca tagcaggaac tactagtaac cttcaggaac aaatagcatg gatgacacat
361 aacccaccga tcccagtggg agaaatttat aaaagatgga taattctggg attaaataaa
421 atagtaagaa tgtatagccc tgtcagcatt ttggacataa aacaagggcc aaaggaaccc
481 tttagagact atgtagaccg gttctttaaa actctaagag ccgaacaagc tacacaagat
541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg cgaacccaga ttgtaagacc
601 attttaagag cattaggacc aggggctaca ttagaagaaa tgatgacagc atgtcaggga
661 gtgggaggac ctagccacaa agcaagagtg ttg
//
last modified: Tue May 31 10:56 2022