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LOCUS	    EU346264		    1092 bp    RNA     linear	VRL 31-DEC-2008
DEFINITION  HIV-1 isolate 440275_0_p1_4 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   EU346264
VERSION     EU346264.1 GI:169635292
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1092)
            Show all sequences for reference 1
  AUTHORS   Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
	    Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
  TITLE     Analyses of HIV-1 drug-resistance profiles among infected
	    adolescents experiencing delayed antiretroviral treatment switch
	    after initial nonsuppressive highly active antiretroviral therapy.
  JOURNAL   AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
  PUBMED    18479228
REFERENCE   2 (bases 1 to 1092)
            Show all sequences for reference 2
  AUTHORS   Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
	    Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
	    Hopkins University School of Medicine, 600 N. Wolfe Street, Park
	    256, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..1092
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="440275_0_p1_4"
		     /isolation_source="subject 440275 plasma drawn at 0 weeks"
		     /db_xref="taxon:11676"
		     /clone="p1_4"
		     /country="USA"
		     /note="PACTG trial 381"
     gene	     <1..>1092
		     /gene="pol"
     CDS	     <1..>1092
		     /gene="pol"
		     /note="contains PR and RT regions"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACA58419.1"
		     /db_xref="GI:169635293"
		     /translation="PQITLWQRPLVTIKIGGQQKEALLDTGADDTVLEDMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISRIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGRHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLN"
BASE COUNT	425 a	 180 c	  231 g    256 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg acaacaaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccag tagaaatatg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cccgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc gagaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg aggaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcctttagat 
     661 aaggacttca ggaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gctgccacag ggatggaaag ggtcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agaccctttt agaaaacaaa acccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa taggacggca tagaacaaaa 
     901 atagaggaac taagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022


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