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LOCUS EU346264 1092 bp RNA linear VRL 31-DEC-2008
DEFINITION HIV-1 isolate 440275_0_p1_4 from USA pol protein (pol) gene,
partial cds
ACCESSION EU346264
VERSION EU346264.1 GI:169635292
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1092)
Show all sequences for reference 1
AUTHORS Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
TITLE Analyses of HIV-1 drug-resistance profiles among infected
adolescents experiencing delayed antiretroviral treatment switch
after initial nonsuppressive highly active antiretroviral therapy.
JOURNAL AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
PUBMED 18479228
REFERENCE 2 (bases 1 to 1092)
Show all sequences for reference 2
AUTHORS Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
TITLE Direct Submission
JOURNAL Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
Hopkins University School of Medicine, 600 N. Wolfe Street, Park
256, Baltimore, MD 21287, USA
FEATURES Location/Qualifiers
source 1..1092
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="440275_0_p1_4"
/isolation_source="subject 440275 plasma drawn at 0 weeks"
/db_xref="taxon:11676"
/clone="p1_4"
/country="USA"
/note="PACTG trial 381"
gene <1..>1092
/gene="pol"
CDS <1..>1092
/gene="pol"
/note="contains PR and RT regions"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACA58419.1"
/db_xref="GI:169635293"
/translation="PQITLWQRPLVTIKIGGQQKEALLDTGADDTVLEDMNLPGRWKP
KMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISRIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPD
IVIYQYMDDLYVGSDLEIGRHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLN"
BASE COUNT 425 a 180 c 231 g 256 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg acaacaaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccag tagaaatatg tggacataaa gctataggta cagtattagt aggacctaca
241 cccgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc gagaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg aggaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcctttagat
661 aaggacttca ggaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gctgccacag ggatggaaag ggtcaccagc aatattccaa
781 agtagcatga caaaaatctt agaccctttt agaaaacaaa acccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa taggacggca tagaacaaaa
901 atagaggaac taagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022