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LOCUS EU346238 1092 bp RNA linear VRL 31-DEC-2008
DEFINITION HIV-1 isolate 400822_0_p2_2 from USA pol protein (pol) gene,
partial cds
ACCESSION EU346238
VERSION EU346238.1 GI:169635243
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1092)
Show all sequences for reference 1
AUTHORS Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
TITLE Analyses of HIV-1 drug-resistance profiles among infected
adolescents experiencing delayed antiretroviral treatment switch
after initial nonsuppressive highly active antiretroviral therapy.
JOURNAL AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
PUBMED 18479228
REFERENCE 2 (bases 1 to 1092)
Show all sequences for reference 2
AUTHORS Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
TITLE Direct Submission
JOURNAL Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
Hopkins University School of Medicine, 600 N. Wolfe Street, Park
256, Baltimore, MD 21287, USA
FEATURES Location/Qualifiers
source 1..1092
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="400822_0_p2_2"
/isolation_source="subject 400822 plasma drawn at 0 weeks"
/db_xref="taxon:11676"
/clone="p2_2"
/country="USA"
/note="PACTG trial 381"
gene <1..>1092
/gene="pol"
CDS <1..>1092
/gene="pol"
/note="contains PR and RT regions"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACA58396.1"
/db_xref="GI:169635244"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDMDLPGRWKP
KMIGGIGGFIKVRQYEQIPIEICGYKAVGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKNFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRKQNPD
LVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVRPIMLPEKDSWTVNDIQKLVGKLN"
BASE COUNT 424 a 183 c 227 g 258 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacagtaa agataggggg gcaattaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgga tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgag
181 cagataccca tagaaatttg tggatataaa gctgtaggta cagtgttagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaggcattaa tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatcc cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt acccttagat
661 aaaaacttca ggaagtatac tgcatttacc atacctagca taaacaatga gacaccaggg
721 attaggtacc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatctt agatcctttc agaaaacaaa atccagactt agtcatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaacaaaa
901 atagaggaac taagacaaca tctgttgaag tggggattta ccacaccaga caaaaagcac
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgacaa atggacagta
1021 cggcctataa tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtt
1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022