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LOCUS	    EU346238		    1092 bp    RNA     linear	VRL 31-DEC-2008
DEFINITION  HIV-1 isolate 400822_0_p2_2 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   EU346238
VERSION     EU346238.1 GI:169635243
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1092)
            Show all sequences for reference 1
  AUTHORS   Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
	    Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
  TITLE     Analyses of HIV-1 drug-resistance profiles among infected
	    adolescents experiencing delayed antiretroviral treatment switch
	    after initial nonsuppressive highly active antiretroviral therapy.
  JOURNAL   AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
  PUBMED    18479228
REFERENCE   2 (bases 1 to 1092)
            Show all sequences for reference 2
  AUTHORS   Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
	    Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
	    Hopkins University School of Medicine, 600 N. Wolfe Street, Park
	    256, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..1092
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="400822_0_p2_2"
		     /isolation_source="subject 400822 plasma drawn at 0 weeks"
		     /db_xref="taxon:11676"
		     /clone="p2_2"
		     /country="USA"
		     /note="PACTG trial 381"
     gene	     <1..>1092
		     /gene="pol"
     CDS	     <1..>1092
		     /gene="pol"
		     /note="contains PR and RT regions"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACA58396.1"
		     /db_xref="GI:169635244"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDMDLPGRWKP
		     KMIGGIGGFIKVRQYEQIPIEICGYKAVGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKNFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRKQNPD
		     LVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVRPIMLPEKDSWTVNDIQKLVGKLN"
BASE COUNT	424 a	 183 c	  227 g    258 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa agataggggg gcaattaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgga tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgag 
     181 cagataccca tagaaatttg tggatataaa gctgtaggta cagtgttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gctgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaggcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatcc cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt acccttagat 
     661 aaaaacttca ggaagtatac tgcatttacc atacctagca taaacaatga gacaccaggg 
     721 attaggtacc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatctt agatcctttc agaaaacaaa atccagactt agtcatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac taagacaaca tctgttgaag tggggattta ccacaccaga caaaaagcac 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgacaa atggacagta 
    1021 cggcctataa tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtt 
    1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022


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