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LOCUS	    EU346204		    1092 bp    RNA     linear	VRL 31-DEC-2008
DEFINITION  HIV-1 isolate 361760_0_p2_1 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   EU346204
VERSION     EU346204.1 GI:169635177
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1092)
            Show all sequences for reference 1
  AUTHORS   Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
	    Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
  TITLE     Analyses of HIV-1 drug-resistance profiles among infected
	    adolescents experiencing delayed antiretroviral treatment switch
	    after initial nonsuppressive highly active antiretroviral therapy.
  JOURNAL   AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
  PUBMED    18479228
REFERENCE   2 (bases 1 to 1092)
            Show all sequences for reference 2
  AUTHORS   Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
	    Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
	    Hopkins University School of Medicine, 600 N. Wolfe Street, Park
	    256, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..1092
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="361760_0_p2_1"
		     /isolation_source="subject 361760 plasma drawn at 0 weeks"
		     /db_xref="taxon:11676"
		     /clone="p2_1"
		     /country="USA"
		     /note="PACTG trial 381"
     gene	     <1..>1092
		     /gene="pol"
     CDS	     <1..>1092
		     /gene="pol"
		     /note="contains PR and RT regions"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACA58364.1"
		     /db_xref="GI:169635178"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEELNLPGRWKP
		     KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLN"
BASE COUNT	427 a	 179 c	  224 g    261 t      1 other
ORIGIN
       1 cctcaratca ctctttggca acgacccctc gtcacaataa aggtcggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aggaactaaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagaaatatg tggacataaa gctattggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaacttgttg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttgaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 gttagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa acccagacat agttatctat 
     841 caatacatgg atgatttgta tgtagggtct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaagaac tgagacaaca tctgttgaag tggggattta caacaccaga caaaaaacat 
     961 cagaaggaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 caacctatag tactgccaga aaaagatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022


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