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LOCUS	    EU342813		    2401 bp    DNA     linear	VRL 30-APR-2008
DEFINITION  HIV-1 isolate 07SP57-372125 from Spain gag protein (gag) gene,
	    complete cds; and pol protein (pol) gene, partial cds
ACCESSION   EU342813
VERSION     EU342813.1 GI:183206839
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2401)
            Show all sequences for reference 1
  AUTHORS   Holguin,A., De Mulder,M. and Yebra,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2007) HIV-1 Molecular epidemiology group.
	    Infectious Diseases Department, Hospital Carlos III, Sinesio
	    Delgado Street 10, Madrid 28029, Spain
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Holguin,A., De Mulder,M., Yebra,G., Lopez,M. and Soriano,V.
  TITLE     Increase of non-B subtypes and recombinants among newly diagnosed
	    HIV-1 native Spaniards and immigrants in Spain.
  JOURNAL   Curr. HIV. Res.. 6(4); 327-34 (2008)
  PUBMED    18691031
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Yebra,G., Rivas,P., Herrero,M.D., Lopez,M., De Mulder,M.,
	    Puente,S., Ramirez-Olivencia,G., Soriano,V. and Holguin,A.
  TITLE     Clinical differences and viral diversity between newly HIV type
	    1-diagnosed African and non-African patients in Spain (2005-2007).
  JOURNAL   AIDS Res. Hum. Retroviruses. 25(1); 37-44 (2009)
  PUBMED    19182919
FEATURES             Location/Qualifiers
     source	     1..2401
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="07SP57-372125"
		     /isolation_source="plasma of subject coming from
		     Equatorial Guinea and residing in Spain"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /note="subtype: recombinant CRF02_AG"
     gene	     1..1479
		     /gene="gag"
     CDS	     1..1479
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ACC54584.1"
		     /db_xref="GI:183206840"
		     /translation="MGARASVLSGGKLDKWEKIRLRPGGKKHYSLKHIVWASRELERF
		     SINPSLLETAEGCQQIMEQLQPALKTGSEELRSLFNTMAVLWCVHQRIDIKDTKEALD
		     KVEEAQNKSQQKKQQAAAATGSSSQNYPIVQNAQGQMVHQNMSPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINDEAAEWDRTHPVHAG
		     PAPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIVLGLNKIVRMYSP
		     VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKSILRAL
		     GPGATLEEMMTACQGVGGPGHKARVLAEAMSQVHQSNIMMQRGNFRGQKTVKCFNCGK
		     EGHVARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFPQSRPEP
		     TAPPAESFGMGEEISSPPKQEPREKELYPPLTSLKSLFGNDP"
     gene	     <1281..>2401
		     /gene="pol"
     CDS	     <1281..>2401
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACC54585.1"
		     /db_xref="GI:183206841"
		     /translation="FFREDLAFQQGKARKFSPEQTRTNSPTSRELWDGGRDILPSEAG
		     TEGKGTIPSFNFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLQEINLQGKWKPKM
		     IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
		     ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICLEMEKEGKISKIGPENPYNTPIFAI
		     KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
		     KDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPYRTQNPEIV
		     IYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPD"
BASE COUNT	914 a	 419 c	  562 g    506 t
ORIGIN
       1 atgggtgcga gagcgtcagt attaagtggg ggaaaattag ataaatggga gaaaattcgc 
      61 ttaaggccag ggggaaagaa acattatagt ctaaaacata tagtatgggc aagcagggag 
     121 ctggaaagat tctcaattaa ccctagcctt ttagaaacag cagaaggatg ccaacaaata 
     181 atggaacagt tacaaccagc tctcaagaca ggatcagaag aacttagatc attatttaat 
     241 acaatggcag ttctttggtg tgtacatcaa aggatagaca taaaagacac caaggaagcc 
     301 ttagataaag tagaggaagc acaaaataag agtcaacaaa agaaacagca ggcagcagct 
     361 gccacaggaa gcagcagcca aaattaccct atagtgcaaa atgcacaagg gcaaatggta 
     421 catcagaaca tgtcacctag gactttaaat gcatgggtga aagtaataga agagaaggct 
     481 tttagcccag aagtcatacc catgtttaca gcattatcag agggagccac cccacaagat 
     541 ttaaatatga tgctaaacat agtgggggga catcaggcag caatgcagat gttaaaagat 
     601 accatcaatg atgaagctgc agaatgggac aggacacatc cagtacatgc agggcctgct 
     661 ccaccaggtc agatgaggga accaagggga agtgacatag caggaactac tagtaccctt 
     721 caagaacaaa taggatggat gacaagcaat ccacctattc cagtgggaga aatctataaa 
     781 agatggatag tcctgggatt aaataaaata gtaagaatgt atagccctgt cagcattttg 
     841 gacataagac aagggccaaa ggaacccttt agagattatg tagataggtt ctttaaaact 
     901 ttgagagctg aacaagccac gcaggaggta aaaaactgga tgacagaaac cttgctggta 
     961 caaaatgcga acccagactg taagtccatt ttaagagcat taggaccagg ggctacatta 
    1021 gaggaaatga tgacagcatg tcagggagtg ggaggacctg gccataaagc aagggttttg 
    1081 gctgaggcaa tgagtcaagt acatcagtcc aacataatga tgcagagagg caactttagg 
    1141 ggtcaaaaaa cagtaaagtg tttcaactgt ggcaaagaag gacacgtagc cagaaattgc 
    1201 agagccccta ggaaaagggg ctgttggaaa tgtgggaagg aaggacacca aatgaaagac 
    1261 tgtactgaga gacaggctaa ttttttaggg aagatttggc cttccagcaa gggaaggcca 
    1321 ggaaattttc cccagagcag accagaacca acagccccac cagcagagag ctttgggatg 
    1381 ggggaagaga tatcctcccc tccgaagcag gaaccgaggg aaaaggaact ataccctcct 
    1441 ttaacttccc tcaaatcact ctttggcaac gacccttagt cacagtaaaa atagggggac 
    1501 agctaataga agccctatta gacacaggag cagatgatac agtattacaa gaaataaatt 
    1561 tacaaggaaa atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac 
    1621 agtatgatca gatacttata gaaatttgtg ggaaaaaagc cataggtacg gtattagtag 
    1681 gacctacacc tgttaacata attggacgaa atatgttgac tcagattggt tgtactttaa 
    1741 attttccaat aagtcctatt gaaaccgtgc ctgtaaaatt gaagccagga atggatggcc 
    1801 caaaggttaa acaatggccc ttgacagaag aaaaaataaa agcactaaca gacatttgtt 
    1861 tagagatgga aaaagaagga aaaatttcaa aaattgggcc tgaaaatcca tacaatactc 
    1921 caatatttgc cataaagaaa aaagatagta ctaaatggag aaaattagta gatttcagag 
    1981 aactcaataa gagaactcaa gacttctggg aggtccaatt aggaatacct catcccgcgg 
    2041 gattaaaaaa gaaaaaatca gtaacagtac tagatgtagg ggatgcatat ttttcagttc 
    2101 ccttagataa agactttaga aagtacactg cattcactat acctagtgta aataatgaga 
    2161 caccaggaat tagatatcag tacaatgtgc ttccacaggg atggaaagga tcaccagcaa 
    2221 tatttcaagc aagcatgaca aaaatcttag agccctatag aacacaaaat ccagagatag 
    2281 tgatctacca atatatggat gatttatatg taggatcaga cttagagata gggcaacata 
    2341 gagcaaaaat agaggagtta agagaacatc tactgaagtg gggatttacc acaccagaca 
    2401 a
//
last modified: Tue May 31 10:56 2022


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