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LOCUS EU342813 2401 bp DNA linear VRL 30-APR-2008
DEFINITION HIV-1 isolate 07SP57-372125 from Spain gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION EU342813
VERSION EU342813.1 GI:183206839
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2401)
Show all sequences for reference 1
AUTHORS Holguin,A., De Mulder,M. and Yebra,G.
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2007) HIV-1 Molecular epidemiology group.
Infectious Diseases Department, Hospital Carlos III, Sinesio
Delgado Street 10, Madrid 28029, Spain
REFERENCE 2
Show all sequences for reference 2
AUTHORS Holguin,A., De Mulder,M., Yebra,G., Lopez,M. and Soriano,V.
TITLE Increase of non-B subtypes and recombinants among newly diagnosed
HIV-1 native Spaniards and immigrants in Spain.
JOURNAL Curr. HIV. Res.. 6(4); 327-34 (2008)
PUBMED 18691031
REFERENCE 3
Show all sequences for reference 3
AUTHORS Yebra,G., Rivas,P., Herrero,M.D., Lopez,M., De Mulder,M.,
Puente,S., Ramirez-Olivencia,G., Soriano,V. and Holguin,A.
TITLE Clinical differences and viral diversity between newly HIV type
1-diagnosed African and non-African patients in Spain (2005-2007).
JOURNAL AIDS Res. Hum. Retroviruses. 25(1); 37-44 (2009)
PUBMED 19182919
FEATURES Location/Qualifiers
source 1..2401
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="07SP57-372125"
/isolation_source="plasma of subject coming from
Equatorial Guinea and residing in Spain"
/db_xref="taxon:11676"
/country="Spain"
/note="subtype: recombinant CRF02_AG"
gene 1..1479
/gene="gag"
CDS 1..1479
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACC54584.1"
/db_xref="GI:183206840"
/translation="MGARASVLSGGKLDKWEKIRLRPGGKKHYSLKHIVWASRELERF
SINPSLLETAEGCQQIMEQLQPALKTGSEELRSLFNTMAVLWCVHQRIDIKDTKEALD
KVEEAQNKSQQKKQQAAAATGSSSQNYPIVQNAQGQMVHQNMSPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNMMLNIVGGHQAAMQMLKDTINDEAAEWDRTHPVHAG
PAPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIVLGLNKIVRMYSP
VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKSILRAL
GPGATLEEMMTACQGVGGPGHKARVLAEAMSQVHQSNIMMQRGNFRGQKTVKCFNCGK
EGHVARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSSKGRPGNFPQSRPEP
TAPPAESFGMGEEISSPPKQEPREKELYPPLTSLKSLFGNDP"
gene <1281..>2401
/gene="pol"
CDS <1281..>2401
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACC54585.1"
/db_xref="GI:183206841"
/translation="FFREDLAFQQGKARKFSPEQTRTNSPTSRELWDGGRDILPSEAG
TEGKGTIPSFNFPQITLWQRPLVTVKIGGQLIEALLDTGADDTVLQEINLQGKWKPKM
IGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPI
ETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICLEMEKEGKISKIGPENPYNTPIFAI
KKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLD
KDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPYRTQNPEIV
IYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPD"
BASE COUNT 914 a 419 c 562 g 506 t
ORIGIN
1 atgggtgcga gagcgtcagt attaagtggg ggaaaattag ataaatggga gaaaattcgc
61 ttaaggccag ggggaaagaa acattatagt ctaaaacata tagtatgggc aagcagggag
121 ctggaaagat tctcaattaa ccctagcctt ttagaaacag cagaaggatg ccaacaaata
181 atggaacagt tacaaccagc tctcaagaca ggatcagaag aacttagatc attatttaat
241 acaatggcag ttctttggtg tgtacatcaa aggatagaca taaaagacac caaggaagcc
301 ttagataaag tagaggaagc acaaaataag agtcaacaaa agaaacagca ggcagcagct
361 gccacaggaa gcagcagcca aaattaccct atagtgcaaa atgcacaagg gcaaatggta
421 catcagaaca tgtcacctag gactttaaat gcatgggtga aagtaataga agagaaggct
481 tttagcccag aagtcatacc catgtttaca gcattatcag agggagccac cccacaagat
541 ttaaatatga tgctaaacat agtgggggga catcaggcag caatgcagat gttaaaagat
601 accatcaatg atgaagctgc agaatgggac aggacacatc cagtacatgc agggcctgct
661 ccaccaggtc agatgaggga accaagggga agtgacatag caggaactac tagtaccctt
721 caagaacaaa taggatggat gacaagcaat ccacctattc cagtgggaga aatctataaa
781 agatggatag tcctgggatt aaataaaata gtaagaatgt atagccctgt cagcattttg
841 gacataagac aagggccaaa ggaacccttt agagattatg tagataggtt ctttaaaact
901 ttgagagctg aacaagccac gcaggaggta aaaaactgga tgacagaaac cttgctggta
961 caaaatgcga acccagactg taagtccatt ttaagagcat taggaccagg ggctacatta
1021 gaggaaatga tgacagcatg tcagggagtg ggaggacctg gccataaagc aagggttttg
1081 gctgaggcaa tgagtcaagt acatcagtcc aacataatga tgcagagagg caactttagg
1141 ggtcaaaaaa cagtaaagtg tttcaactgt ggcaaagaag gacacgtagc cagaaattgc
1201 agagccccta ggaaaagggg ctgttggaaa tgtgggaagg aaggacacca aatgaaagac
1261 tgtactgaga gacaggctaa ttttttaggg aagatttggc cttccagcaa gggaaggcca
1321 ggaaattttc cccagagcag accagaacca acagccccac cagcagagag ctttgggatg
1381 ggggaagaga tatcctcccc tccgaagcag gaaccgaggg aaaaggaact ataccctcct
1441 ttaacttccc tcaaatcact ctttggcaac gacccttagt cacagtaaaa atagggggac
1501 agctaataga agccctatta gacacaggag cagatgatac agtattacaa gaaataaatt
1561 tacaaggaaa atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac
1621 agtatgatca gatacttata gaaatttgtg ggaaaaaagc cataggtacg gtattagtag
1681 gacctacacc tgttaacata attggacgaa atatgttgac tcagattggt tgtactttaa
1741 attttccaat aagtcctatt gaaaccgtgc ctgtaaaatt gaagccagga atggatggcc
1801 caaaggttaa acaatggccc ttgacagaag aaaaaataaa agcactaaca gacatttgtt
1861 tagagatgga aaaagaagga aaaatttcaa aaattgggcc tgaaaatcca tacaatactc
1921 caatatttgc cataaagaaa aaagatagta ctaaatggag aaaattagta gatttcagag
1981 aactcaataa gagaactcaa gacttctggg aggtccaatt aggaatacct catcccgcgg
2041 gattaaaaaa gaaaaaatca gtaacagtac tagatgtagg ggatgcatat ttttcagttc
2101 ccttagataa agactttaga aagtacactg cattcactat acctagtgta aataatgaga
2161 caccaggaat tagatatcag tacaatgtgc ttccacaggg atggaaagga tcaccagcaa
2221 tatttcaagc aagcatgaca aaaatcttag agccctatag aacacaaaat ccagagatag
2281 tgatctacca atatatggat gatttatatg taggatcaga cttagagata gggcaacata
2341 gagcaaaaat agaggagtta agagaacatc tactgaagtg gggatttacc acaccagaca
2401 a
//
last modified: Tue May 31 10:56 2022