View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU255525 1302 bp RNA linear VRL 23-JUN-2008
DEFINITION HIV-1 isolate 07SP40-371782 from Spain pol protein (pol) gene,
partial cds
ACCESSION EU255525
VERSION EU255525.2 GI:192288336
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Holguin,A., De Mulder,M., Yebra,G., Lopez,M. and Soriano,V.
TITLE Increase of non-B subtypes and recombinants among newly diagnosed
HIV-1 native Spaniards and immigrants in Spain.
JOURNAL Curr. HIV. Res.. 6(4); 327-34 (2008)
PUBMED 18691031
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Holguin,A.
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2007) Hospital Carlos III, Sinesio Delgado 10,
Madrid 28029, Spain
REFERENCE 3 (bases 1 to 1302)
Show all sequences for reference 3
AUTHORS Holguin,A.
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2008) Hospital Carlos III, Sinesio Delgado 10,
Madrid 28029, Spain
REFERENCE 4
Show all sequences for reference 4
AUTHORS Yebra,G., Rivas,P., Herrero,M.D., Lopez,M., De Mulder,M.,
Puente,S., Ramirez-Olivencia,G., Soriano,V. and Holguin,A.
TITLE Clinical differences and viral diversity between newly HIV type
1-diagnosed African and non-African patients in Spain (2005-2007).
JOURNAL AIDS Res. Hum. Retroviruses. 25(1); 37-44 (2009)
PUBMED 19182919
REFERENCE 5
Show all sequences for reference 5
AUTHORS Yebra,G., Delgado,R., Pulido,F., Rubio,R., Galan,J.C., Moreno,S.
and Holguin,A.
TITLE Different trends of transmitted HIV-1 drug resistance in Madrid,
Spain, among risk groups in the last decade.
JOURNAL Arch. Virol.. 159(5); 1079-87 (2014)
PUBMED 24297490
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="07SP40-371782"
/db_xref="taxon:11676"
/country="Spain"
/note="recombinant CRF11_cpx subject originated from
Equatorial Guinea"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABX56395.1"
/db_xref="GI:161075277"
/translation="PQITLWQRPLVTIKVAGQLREALLDTGADDTVLENLELPGRWKP
KMIGGIGGFIKVKQYEEIAIEIEGKKAIGTVLIGPTPVNIIGRNMLTQIGCTLNFPIS
PVDTVPVKLKPGMDGPKVKQWPLTEEKIKALXEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDXXFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLELGQHREKVEELRNHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKECWTVNDIQKLVGKLNWASQIYPGIKVXQLCKLIRGTKALTDVV
TLTAEAELELAENREILKEPVHGVYYDPSKDIVAEVQKQGHD"
BASE COUNT 510 a 209 c 280 g 290 t 13 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gttacaataa aagtagcggg gcagctgagg
61 gaagctctat tagatacagg agcagatgat acagtattag aaaacttaga gttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tyaaagtcaa acagtatgag
181 gaaatagcca tagaaattga aggaaaaaag gctataggta cagtrttaat aggacctaca
241 cctgtcaaca taattggaag gaatatgttg actcagattg gatgtacttt aaattttcca
301 attagtcctg ttgacactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa yagaaatttg yacagaaatg
421 garaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataacac tccagtgttt
481 gccataaaga aaaaggacag cactaaatgg agaaaattag ttgattttag agaactcaat
541 aaaagractc aagacttctg ggaagtccag ttaggaatac cacacccagc agggttaaaa
601 aagaaaaagt cagtaacagt tctagatgta ggggatgcat atttttcagt ccctctagat
661 cnarrcttca ggaagtatac tgcattcact atacctagta taaacaatga gacaccaggg
721 gttagatatc agtacaacgt gctaccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaagatytt agaaccattt agaaaacaaa acccagaaat agttatctat
841 cagtacatgg atgacttgta tgtaggatct gatttagaat taggrcagca tagagaaaag
901 gtagaggaac taagaaatca tctcttgaag tggggattca ccacaccaga taaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgagctcc atcccgacaa atggacggta
1021 caacctatac agctgccaga caaagaatgt tggactgtta atgacataca aaaattagtg
1081 ggaaarctaa attgggcaag tcagatttat ccagggatca aagtaaraca gttatgtaaa
1141 ctcattaggg ggacaaaagc actaacagat gtagtaacat tgacagcaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtgc atggggtata ttatgaccca
1261 tcaaaagata tagtagcaga agtacagaaa caagggcatg ac
//
last modified: Tue May 31 10:56 2022