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LOCUS EU255513 1302 bp RNA linear VRL 23-JUN-2008
DEFINITION HIV-1 isolate 07SP28-350582 from Spain pol protein (pol) gene,
partial cds
ACCESSION EU255513
VERSION EU255513.1 GI:161075252
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Holguin,A., De Mulder,M., Yebra,G., Lopez,M. and Soriano,V.
TITLE Increase of non-B subtypes and recombinants among newly diagnosed
HIV-1 native Spaniards and immigrants in Spain.
JOURNAL Curr. HIV. Res.. 6(4); 327-34 (2008)
PUBMED 18691031
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Holguin,A.
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2007) Hospital Carlos III, Sinesio Delgado 10,
Madrid 28029, Spain
REFERENCE 3
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AUTHORS Yebra,G., Rivas,P., Herrero,M.D., Lopez,M., De Mulder,M.,
Puente,S., Ramirez-Olivencia,G., Soriano,V. and Holguin,A.
TITLE Clinical differences and viral diversity between newly HIV type
1-diagnosed African and non-African patients in Spain (2005-2007).
JOURNAL AIDS Res. Hum. Retroviruses. 25(1); 37-44 (2009)
PUBMED 19182919
REFERENCE 4
Show all sequences for reference 4
AUTHORS Gonzalez-Alba,J.M., Holguin,A., Garcia,R., Garcia-Bujalance,S.,
Alonso,R., Suarez,A., Delgado,R., Cardenoso,L., Gonzalez,R.,
Garcia-Bermejo,I., Portero,F., de Mendoza,C., Gonzalez-Candelas,F.
and Galan,J.C.
TITLE Molecular Surveillance of HIV-1 in Madrid, Spain: a Phylogeographic
Analysis
JOURNAL J. Virol. 85 (20), 10755-10763 (2011)
PUBMED 21795343
REFERENCE 5
Show all sequences for reference 5
AUTHORS Yebra,G., Delgado,R., Pulido,F., Rubio,R., Galan,J.C., Moreno,S.
and Holguin,A.
TITLE Different trends of transmitted HIV-1 drug resistance in Madrid,
Spain, among risk groups in the last decade.
JOURNAL Arch. Virol.. 159(5); 1079-87 (2014)
PUBMED 24297490
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="07SP28-350582"
/db_xref="taxon:11676"
/country="Spain"
/note="subject originated from Equatorial Guinea genotype:
C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABX56383.1"
/db_xref="GI:161075253"
/translation="PQITLWQRPLVAIKVEGQIREALLDTGADDTVLEEIKLPGNWKP
XMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITRIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSTNNETPGIRYCYNVLPQGWKGSPAIFQSSMTKILEPFRTQNKD
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCXLLRGTKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQE"
BASE COUNT 511 a 209 c 280 g 290 t 12 other
ORIGIN
1 cctcaaatca ctctttggca rcgacccctt gtygcaataa aagtagaggg acagataagr
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa actgccagga
121 aattggaaac caaraatgat aggrggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtaytagt aggacctaca
241 cctgtcaaca taattggaag raatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtc
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatatg cgaggagatg
421 gagaaggaag gaaaaattac aagaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttagggatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 aaggaattca ggaartatac tgcattcacc atacctagta caaacaatga aacaccagga
721 attagatatt gctataatgt tcttccacar gggtggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt aggacacaaa acaaagacat agttatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagargagt taagagaaca tctattgagg tggggattta ctacaccaga caagaaacat
961 cagaaagaac ctccattttt atggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 gggaaattaa actgggcaag tcagatttac ccagggatta aggtaaagca attgtgtara
1141 ctccttagrg gaaccaaagc attaacagac atagtaccac taactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagact taatagctga aatacagaaa caggggcagg aa
//
last modified: Tue May 31 10:56 2022