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LOCUS	    EU242023		    1494 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2966 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU242023
VERSION     EU242023.1 GI:166025629
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1494)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1494)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1494
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2966"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1494
		     /gene="gag"
     CDS	     1..1494
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78125.1"
		     /db_xref="GI:166025630"
		     /translation="MGARASVLSGGXLDXWEKIRLRPGGKKKYXLKHIVWASRELERF
		     AVNPGLLETSEGCRQILGQLQPXLQTGSEELRSLYNTXATLYCVHQNIEVRDTKEALE
		     KXEEEQNKSKKKAQQAAADTGNNSKVSQNYPIVQNMQGQMVHQPISPRTLNAWVKVVE
		     EKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
		     HAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGDIYKRWIILGLNKIVRM
		     YSPTSILDIXQGPKEPFRDYVDRFYKTLRAEQASQXVKNWMTXTLLVQNANPDCKTIL
		     KALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTTAIMMQKGNVRKXVKCFNC
		     GKLGHIAKNCRAPRKKGCWXCGREGHQMKDCTERQANFLGKIWPSNKGRPGNFLQSRP
		     EPTAPPEESFRFGEEXKTPSQKQEPIDKEXYPLXSLRSLFGSDPSSQ"
BASE COUNT	540 a	 289 c	  363 g    279 t     23 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggaraattgg ataratggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa aaaatatara ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagaaggctg tagacaaata 
     181 ctgggacagt tacaaccakc ccttcagaca ggatcagaag aacttagatc attatataat 
     241 acartagcaa ccctctattg tgtgcatcaa aatatagagg taagagacac caaggaagct 
     301 ttagagaagr tagaggaaga gcaaaacaaa agtaagaaaa argcacagca agcagcagct 
     361 gacacaggaa acaacagcaa rgtcagccaa aattacccta tagtgcagaa catgcagggg 
     421 caaatggtac accagccgat atcacctagr actttaaatg cgtgggtaaa agtagtagaa 
     481 gaaaaggctt tcagcccaga agtaataccc atgtttacag cattatcaga aggagccacc 
     541 ccacaagatt taaacaccat gttaaacaca gtggggggac atcaggcagc catgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gactgcatcc agtgcatgca 
     661 gggcctattg caccaggcca gatgagagaa ccraggggaa gtgayatagc aggaactact 
     721 agtaccctcc aggaacarat agcrtggatg acaaataatc cacctatccc agtgggagac 
     781 atctataaaa gatggataat cctgggatta aataaaatag taaggatgta tagccctacc 
     841 agcattctgg acataaraca aggaccaaaa gaacccttta gagactatgt agaccggttc 
     901 tataaractc taagagccga gcaagcttca caagakgtaa aaaactggat gactgawacc 
     961 ttgttggtcc aaaatgcgaa cccagactgt aagactattt taaaagcatt aggaccagca 
    1021 gctacactag aagaaatgat gacagcatgt cagggagtgg gaggacctgg ccataaagca 
    1081 agagttttgg cggaagcaat gagccaggta acaaatacaa ctgccataat gatgcagaaa 
    1141 ggcaatgtta gaaaagwtgt taagtgyttc aattgtggca aactagggca catagccaaa 
    1201 aattgcaggg cccctaggaa gaagggctgt tggaratgtg gaagggaagg acaccaaatg 
    1261 aaggattgta ctgagagaca ggctaatttt ttagggaaaa tctggccttc caacaagggg 
    1321 aggccaggga atttccttca gagcagacca gagccaacag ccccaccaga ggagagtttc 
    1381 agatttgggg aagagrcaaa aaccccctct cagaagcagg agccgataga caaggagayg 
    1441 tatcctttar cttccctcag atcactcttt ggcagcgacc cctcgtcaca ataa
//
last modified: Tue May 31 10:56 2022


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