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LOCUS EU242023 1494 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2966 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU242023
VERSION EU242023.1 GI:166025629
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1494)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1494)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1494
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2966"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1494
/gene="gag"
CDS 1..1494
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78125.1"
/db_xref="GI:166025630"
/translation="MGARASVLSGGXLDXWEKIRLRPGGKKKYXLKHIVWASRELERF
AVNPGLLETSEGCRQILGQLQPXLQTGSEELRSLYNTXATLYCVHQNIEVRDTKEALE
KXEEEQNKSKKKAQQAAADTGNNSKVSQNYPIVQNMQGQMVHQPISPRTLNAWVKVVE
EKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
HAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGDIYKRWIILGLNKIVRM
YSPTSILDIXQGPKEPFRDYVDRFYKTLRAEQASQXVKNWMTXTLLVQNANPDCKTIL
KALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTTAIMMQKGNVRKXVKCFNC
GKLGHIAKNCRAPRKKGCWXCGREGHQMKDCTERQANFLGKIWPSNKGRPGNFLQSRP
EPTAPPEESFRFGEEXKTPSQKQEPIDKEXYPLXSLRSLFGSDPSSQ"
BASE COUNT 540 a 289 c 363 g 279 t 23 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggaraattgg ataratggga aaaaattcgg
61 ttaaggccag ggggaaagaa aaaatatara ttaaaacata tagtatgggc aagcagggag
121 ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagaaggctg tagacaaata
181 ctgggacagt tacaaccakc ccttcagaca ggatcagaag aacttagatc attatataat
241 acartagcaa ccctctattg tgtgcatcaa aatatagagg taagagacac caaggaagct
301 ttagagaagr tagaggaaga gcaaaacaaa agtaagaaaa argcacagca agcagcagct
361 gacacaggaa acaacagcaa rgtcagccaa aattacccta tagtgcagaa catgcagggg
421 caaatggtac accagccgat atcacctagr actttaaatg cgtgggtaaa agtagtagaa
481 gaaaaggctt tcagcccaga agtaataccc atgtttacag cattatcaga aggagccacc
541 ccacaagatt taaacaccat gttaaacaca gtggggggac atcaggcagc catgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gactgcatcc agtgcatgca
661 gggcctattg caccaggcca gatgagagaa ccraggggaa gtgayatagc aggaactact
721 agtaccctcc aggaacarat agcrtggatg acaaataatc cacctatccc agtgggagac
781 atctataaaa gatggataat cctgggatta aataaaatag taaggatgta tagccctacc
841 agcattctgg acataaraca aggaccaaaa gaacccttta gagactatgt agaccggttc
901 tataaractc taagagccga gcaagcttca caagakgtaa aaaactggat gactgawacc
961 ttgttggtcc aaaatgcgaa cccagactgt aagactattt taaaagcatt aggaccagca
1021 gctacactag aagaaatgat gacagcatgt cagggagtgg gaggacctgg ccataaagca
1081 agagttttgg cggaagcaat gagccaggta acaaatacaa ctgccataat gatgcagaaa
1141 ggcaatgtta gaaaagwtgt taagtgyttc aattgtggca aactagggca catagccaaa
1201 aattgcaggg cccctaggaa gaagggctgt tggaratgtg gaagggaagg acaccaaatg
1261 aaggattgta ctgagagaca ggctaatttt ttagggaaaa tctggccttc caacaagggg
1321 aggccaggga atttccttca gagcagacca gagccaacag ccccaccaga ggagagtttc
1381 agatttgggg aagagrcaaa aaccccctct cagaagcagg agccgataga caaggagayg
1441 tatcctttar cttccctcag atcactcttt ggcagcgacc cctcgtcaca ataa
//
last modified: Tue May 31 10:56 2022