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LOCUS	    EU241968		    1524 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2911 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU241968
VERSION     EU241968.1 GI:166025519
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1524)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1524)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1524
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2911"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1524
		     /gene="gag"
     CDS	     1..1524
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78070.1"
		     /db_xref="GI:166025520"
		     /translation="MGARASXLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERF
		     AVNPGLLETSEGCRQILXQLQPSLQTGSEELKSLYNTVATLYCVHQKIEIKDTKEALD
		     KIEEEQNKSKKKAQQTAADTENSRQXSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVE
		     EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGXHQAAMQMLKETINEEAAEWDRMHPV
		     QAGPIAPGQIREPRGSDIAGTTSTLQEQITWMTNNPPIPVGEIYKRWIILGLNKIVRM
		     YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTIL
		     KALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATSSAXAIMMQRGNFRNQRKTVK
		     CFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFL
		     QNXPAPTAPLEPTAPPEESFRFGEETTTPSQEQKPRGEELYPSASLRSLFGNDPLSQ"
BASE COUNT	565 a	 301 c	  364 g    280 t     14 other
ORIGIN
       1 atgggtgcga gagcgtcart attaagcggg ggagaattag atcgatggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa aaaatataga ttaaaacata tagtatgggc aagcagggaa 
     121 ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagaaggctg tagacaaata 
     181 ctgrkacagc tacaaccatc ccttcagaca ggatcagaag aacttaaatc attatataat 
     241 acagtagcaa ccctctattg tgtgcatcaa aagatagaga taaaagacac caaggaagct 
     301 ytagataaaa tagaggaaga gcaaaacaaa agtaagaaaa aggcacagca aacagcagct 
     361 gacacagaaa acagtagaca ggycagccaa aattacccta tagtgcagaa cattcagggg 
     421 caaatggtac atcaggccat atcacctaga actttaaatg catgggtaaa agtagtagaa 
     481 gagaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga aggggccacc 
     541 ccacaagatt taaacaccat gctaaacaca gtgggggrac atcaagcagc catgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gaatgcatcc agtacaggca 
     661 gggcctattg caccaggcca gataagagaa ccaaggggaa gtgacatagc aggaactact 
     721 agtaccctgc aggaacaaat aacatggatg acaaataatc cacctatccc agtaggagar 
     781 atctataaaa gatggataat cctgggatta aataaaatag taagaatgta tagccctacc 
     841 agcattctgg acataagaca aggaccaaag gaacccttta gagattatgt agaccggttc 
     901 tataaaacac taagagctga gcaagcttca caggaggtaa aaaattggat gacagaaacc 
     961 ttgttagtcc aaaatgcaaa cccagattgt aagactattc taaaagcatt gggaccagca 
    1021 gctaccctag aagaaatgat gacagcatgt cagggagtgg gaggacccgg ccacaaagca 
    1081 agagttttgg cggaagcaat gagycaagca acaagttcag ctrctgccat aatgatgcag 
    1141 agaggcaatt ttaggaacca aagaaagact gttaagtgtt tcaattgtgg caaagaaggg 
    1201 catatagcta aaaattgcag ggcycctagg aaaaggggct gttggaaatg tggaaaggaa 
    1261 ggacaccaaa tgaaagattg tactgagaga caggctaatt ttttagggaa gatctggcct 
    1321 tcccacaagg ggaggccagg aaayttyctt cagaaycrac cagcaccaac agccccacta 
    1381 gagccaaccg ccccaccaga ggagagcttc aggtttgggg aggagacaac aaccccctct 
    1441 caggagcaga agccgagggg cgaggaactg tatccctcag cttccctcag atcactcttt 
    1501 ggcaacgacc cattgtcaca ataa
//
last modified: Tue May 31 10:56 2022


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