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LOCUS EU241968 1524 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2911 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU241968
VERSION EU241968.1 GI:166025519
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1524)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1524)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1524
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2911"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1524
/gene="gag"
CDS 1..1524
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78070.1"
/db_xref="GI:166025520"
/translation="MGARASXLSGGELDRWEKIRLRPGGKKKYRLKHIVWASRELERF
AVNPGLLETSEGCRQILXQLQPSLQTGSEELKSLYNTVATLYCVHQKIEIKDTKEALD
KIEEEQNKSKKKAQQTAADTENSRQXSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVE
EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGXHQAAMQMLKETINEEAAEWDRMHPV
QAGPIAPGQIREPRGSDIAGTTSTLQEQITWMTNNPPIPVGEIYKRWIILGLNKIVRM
YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTIL
KALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATSSAXAIMMQRGNFRNQRKTVK
CFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFL
QNXPAPTAPLEPTAPPEESFRFGEETTTPSQEQKPRGEELYPSASLRSLFGNDPLSQ"
BASE COUNT 565 a 301 c 364 g 280 t 14 other
ORIGIN
1 atgggtgcga gagcgtcart attaagcggg ggagaattag atcgatggga aaaaattcgg
61 ttaaggccag ggggaaagaa aaaatataga ttaaaacata tagtatgggc aagcagggaa
121 ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagaaggctg tagacaaata
181 ctgrkacagc tacaaccatc ccttcagaca ggatcagaag aacttaaatc attatataat
241 acagtagcaa ccctctattg tgtgcatcaa aagatagaga taaaagacac caaggaagct
301 ytagataaaa tagaggaaga gcaaaacaaa agtaagaaaa aggcacagca aacagcagct
361 gacacagaaa acagtagaca ggycagccaa aattacccta tagtgcagaa cattcagggg
421 caaatggtac atcaggccat atcacctaga actttaaatg catgggtaaa agtagtagaa
481 gagaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga aggggccacc
541 ccacaagatt taaacaccat gctaaacaca gtgggggrac atcaagcagc catgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gaatgcatcc agtacaggca
661 gggcctattg caccaggcca gataagagaa ccaaggggaa gtgacatagc aggaactact
721 agtaccctgc aggaacaaat aacatggatg acaaataatc cacctatccc agtaggagar
781 atctataaaa gatggataat cctgggatta aataaaatag taagaatgta tagccctacc
841 agcattctgg acataagaca aggaccaaag gaacccttta gagattatgt agaccggttc
901 tataaaacac taagagctga gcaagcttca caggaggtaa aaaattggat gacagaaacc
961 ttgttagtcc aaaatgcaaa cccagattgt aagactattc taaaagcatt gggaccagca
1021 gctaccctag aagaaatgat gacagcatgt cagggagtgg gaggacccgg ccacaaagca
1081 agagttttgg cggaagcaat gagycaagca acaagttcag ctrctgccat aatgatgcag
1141 agaggcaatt ttaggaacca aagaaagact gttaagtgtt tcaattgtgg caaagaaggg
1201 catatagcta aaaattgcag ggcycctagg aaaaggggct gttggaaatg tggaaaggaa
1261 ggacaccaaa tgaaagattg tactgagaga caggctaatt ttttagggaa gatctggcct
1321 tcccacaagg ggaggccagg aaayttyctt cagaaycrac cagcaccaac agccccacta
1381 gagccaaccg ccccaccaga ggagagcttc aggtttgggg aggagacaac aaccccctct
1441 caggagcaga agccgagggg cgaggaactg tatccctcag cttccctcag atcactcttt
1501 ggcaacgacc cattgtcaca ataa
//
last modified: Tue May 31 10:56 2022