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LOCUS EU236537 1497 bp RNA linear VRL 03-APR-2008
DEFINITION HIV-1 isolate 9376 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION EU236537
VERSION EU236537.1 GI:159171440
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Episodic sexual transmission of HIV revealed by molecular
phylodynamics
JOURNAL PLoS Med. 5 (3), E50 (2008)
PUBMED 18351795
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2007) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="9376"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABW96116.1"
/db_xref="GI:159171441"
/translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEDMNLPGKWKP
KMIGGIGGFIKVRQYDNILLEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGTDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQHSMTKILEPFRKQNPD
IXIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKT
GKYARMRGAHTNDVRQLTEAVQKIATESIVIWGKTPKFKLPIQKETWET"
BASE COUNT 602 a 248 c 309 g 336 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa ggataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtgttag aagatatgaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 aacatactcc tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaacggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagaaaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagatttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 catagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agwtatctat
841 caatacatgg atgatttgta tgtaggctct gacttagaaa tagggcagca tagaacaaaa
901 atagaagaac tgagacaaca tttgttgaag tgggggttta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaacttc atcctgataa atggacagtg
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca aaaattagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca attatgtaaa
1141 ctccttaggg gaaccaaagc attaacagaa gtagtaccac taacagaaga agcagagcta
1201 gaactrgcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgacccc
1261 tcaaaagact taatagcaga actacagaag caggggcaag gccaatggac atatcaaatt
1321 tatcaagagc catttaaaaa cctgaaaaca ggaaaatatg caagaatgag gggtgcccac
1381 actaatgatg taagacagtt aacagaggca gtgcaaaaaa tagctacaga aagtatagta
1441 atatggggaa agactcctaa attcaaacta cccatacaaa aagaaacatg ggaaaca
//
last modified: Tue May 31 10:56 2022