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LOCUS EU236516 1497 bp RNA linear VRL 03-APR-2008
DEFINITION HIV-1 isolate 8020 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION EU236516
VERSION EU236516.1 GI:159171378
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Episodic sexual transmission of HIV revealed by molecular
phylodynamics
JOURNAL PLoS Med. 5 (3), E50 (2008)
PUBMED 18351795
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2007) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="8020"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABW96095.1"
/db_xref="GI:159171379"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMXLPGRWKP
KMIGGIGGFIKVRQYDNILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIDTVPVKLKPGTDGPKVKQWPLTEEKIKALXEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVI
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKT
GKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQRETWDT"
BASE COUNT 597 a 243 c 311 g 338 t 8 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa arataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgar tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 aacatactca tagaaatytg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattgggag aaatctattg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgatactgt accagtaaaa ttaaagccag gaacggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattar tagaaatttg tacagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagaaaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc ggggttaaaa
601 aagaaaaaat cwgtaacagt rctggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagatttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 tatagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaagaac tragagaaca tttgttgaag tgggggttta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaacttc atcctgataa atggacagtg
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca aaaattagtg
1081 ggaaaattra attgggcaag tcagatttat gcagggatta aagtaaggca attatgtaaa
1141 ctccttaggg gaaccaaagc attaacagaa gtaataccac taacagaaga agcagagcta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgacccc
1261 tcaaaagact taatagcaga actgcagaag caggggcaag gccaatggac atatcaaatt
1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaatgag gggtgcccac
1381 actaatgatg taaaacagtt aacagaggca gtgcaaaaaa tagccacaga aagtatagta
1441 atatggggaa agactcctaa attcaaacta cccatacaaa gagagacatg ggacaca
//
last modified: Tue May 31 10:56 2022