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LOCUS	    EU236516		    1497 bp    RNA     linear	VRL 03-APR-2008
DEFINITION  HIV-1 isolate 8020 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   EU236516
VERSION     EU236516.1 GI:159171378
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Episodic sexual transmission of HIV revealed by molecular
	    phylodynamics
  JOURNAL   PLoS Med. 5 (3), E50 (2008)
  PUBMED    18351795
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2007) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="8020"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABW96095.1"
		     /db_xref="GI:159171379"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMXLPGRWKP
		     KMIGGIGGFIKVRQYDNILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIDTVPVKLKPGTDGPKVKQWPLTEEKIKALXEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVI
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKT
		     GKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQRETWDT"
BASE COUNT	597 a	 243 c	  311 g    338 t      8 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa arataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtgttag aagaaatgar tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 aacatactca tagaaatytg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattgggag aaatctattg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgatactgt accagtaaaa ttaaagccag gaacggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattar tagaaatttg tacagagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagaaaactc aagacttctg ggaagttcaa ttagggatac cacatcccgc ggggttaaaa 
     601 aagaaaaaat cwgtaacagt rctggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagatttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 tatagcatga caaaaatctt agagcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaagaac tragagaaca tttgttgaag tgggggttta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaacttc atcctgataa atggacagtg 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca aaaattagtg 
    1081 ggaaaattra attgggcaag tcagatttat gcagggatta aagtaaggca attatgtaaa 
    1141 ctccttaggg gaaccaaagc attaacagaa gtaataccac taacagaaga agcagagcta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgacccc 
    1261 tcaaaagact taatagcaga actgcagaag caggggcaag gccaatggac atatcaaatt 
    1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaatgag gggtgcccac 
    1381 actaatgatg taaaacagtt aacagaggca gtgcaaaaaa tagccacaga aagtatagta 
    1441 atatggggaa agactcctaa attcaaacta cccatacaaa gagagacatg ggacaca
//
last modified: Tue May 31 10:56 2022


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