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LOCUS	    EU236475		    1497 bp    RNA     linear	VRL 03-APR-2008
DEFINITION  HIV-1 isolate 7877 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   EU236475
VERSION     EU236475.1 GI:159171252
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Episodic sexual transmission of HIV revealed by molecular
	    phylodynamics
  JOURNAL   PLoS Med. 5 (3), E50 (2008)
  PUBMED    18351795
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2007) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="7877"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABW96054.1"
		     /db_xref="GI:159171253"
		     /translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMDLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIXALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKQKKSVTVLDVGDAYFSVP
		     LDXXFRXYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGXKXLTEVV
		     PLTKEAELELAENREILKEPVHGVYYDPSKDLIAEVQKQGQGQWXYQIYQEPFKNLKT
		     GKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEA"
BASE COUNT	594 a	 248 c	  310 g    330 t     15 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctt gtcacagtaa gaataggagg gcaattaaag 
      61 gaagctctat tagatacagg agcggatgat acagtattag aagatatgga tttgccagga 
     121 agatggaaac caaaaatgat agggggtatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctatcggta cagtattagt aggacccaca 
     241 cctgtcaaca taattggaag aaatctgttg acacagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtwaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aragcattag tagaaatttg yacagaaatg 
     421 gaaaargaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatccttc agggttaaaa 
     601 cagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 raaamyttya ggargtayac tgcatttact atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatcttccaa 
     781 agtagcatga caaaaatctt agaccctttt agaaaacaga atccagaaat agttatctay 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagrcaaca cttgttgaag tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ccccattcct gtggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tactgccaga aaaagatagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac ccagggatta aagtaagaca attatgtaaa 
    1141 ctccttaggg garccaaarc actaacagaa gtagtaccac taacaaaaga agcagaacta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagacc taatagcaga agtacagaag caggggcaag gccaatggwc atatcaaatt 
    1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaacgag gggtgcccac 
    1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga gagcatagta 
    1441 atatggggaa agactcctaa atttaaacta cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022


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