View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU236475 1497 bp RNA linear VRL 03-APR-2008
DEFINITION HIV-1 isolate 7877 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION EU236475
VERSION EU236475.1 GI:159171252
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Episodic sexual transmission of HIV revealed by molecular
phylodynamics
JOURNAL PLoS Med. 5 (3), E50 (2008)
PUBMED 18351795
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2007) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="7877"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABW96054.1"
/db_xref="GI:159171253"
/translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMDLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIXALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKQKKSVTVLDVGDAYFSVP
LDXXFRXYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGXKXLTEVV
PLTKEAELELAENREILKEPVHGVYYDPSKDLIAEVQKQGQGQWXYQIYQEPFKNLKT
GKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEA"
BASE COUNT 594 a 248 c 310 g 330 t 15 other
ORIGIN
1 cctcagatca ctctttggca acgacccctt gtcacagtaa gaataggagg gcaattaaag
61 gaagctctat tagatacagg agcggatgat acagtattag aagatatgga tttgccagga
121 agatggaaac caaaaatgat agggggtatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatctg tggacataaa gctatcggta cagtattagt aggacccaca
241 cctgtcaaca taattggaag aaatctgttg acacagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtwaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aragcattag tagaaatttg yacagaaatg
421 gaaaargaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatccttc agggttaaaa
601 cagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 raaamyttya ggargtayac tgcatttact atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatcttccaa
781 agtagcatga caaaaatctt agaccctttt agaaaacaga atccagaaat agttatctay
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagrcaaca cttgttgaag tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ccccattcct gtggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tactgccaga aaaagatagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac ccagggatta aagtaagaca attatgtaaa
1141 ctccttaggg garccaaarc actaacagaa gtagtaccac taacaaaaga agcagaacta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagacc taatagcaga agtacagaag caggggcaag gccaatggwc atatcaaatt
1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaacgag gggtgcccac
1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga gagcatagta
1441 atatggggaa agactcctaa atttaaacta cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022