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LOCUS EU236443 1497 bp RNA linear VRL 03-APR-2008
DEFINITION HIV-1 isolate 9272 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION EU236443
VERSION EU236443.1 GI:159171134
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Episodic sexual transmission of HIV revealed by molecular
phylodynamics
JOURNAL PLoS Med. 5 (3), E50 (2008)
PUBMED 18351795
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2007) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="9272"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABW96022.1"
/db_xref="GI:159171135"
/translation="PQITLWQRPLVTIRIGGQVKEALLDTGADDTVLEEMSLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGQKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPD
MVIYQYMDDLYVGSDLEIEQHRTKIEKLREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQEQGQWTYQIYQEPFKNLKT
GKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEA"
BASE COUNT 608 a 245 c 320 g 324 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa ggataggagg gcaagtaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccaa tagaaatttg tggacaaaaa gctataggta cagtgttaat aggacctaca
241 ccggtcaaca taataggaag aaatctgttg actaagattg gttgcacctt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaactag tagatttcag ggaacttaat
541 aagaaaactc aagacttctg ggaagttcag ttaggaatac cacatcccgc aggattaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagac
661 aaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gctaccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga taaaaatttt agagcctttt agaaaacaaa atccagacat ggttatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagaacagca tagaacaaaa
901 atagagaaac tgagagaaca tctgttaagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggg tatgaactcc atcctgataa atggacagta
1021 cagcctatac agctaccaga aaaagacagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatatac ccagggatta aggtgaggca attgtgtaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtagtaccac taacagaaga agcagaacta
1201 gaactggcag aaaacaggga gattctaaaa gagccagtgc atggggtgta ttatgaccca
1261 tcaaaagact tagtagcaga aatacagaag caggagcaag gccagtggac atatcaaatt
1321 tatcaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaatgag gggtgcccac
1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga aagcatagta
1441 atatggggaa agactcctaa atttagacta cccatacaga aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022