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LOCUS EU184149 1043 bp RNA linear VRL 08-MAY-2008
DEFINITION HIV-1 isolate 872v3_108 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION EU184149
VERSION EU184149.1 GI:164416823
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1043)
Show all sequences for reference 1
AUTHORS Gottlieb,G.S., Heath,L., Nickle,D.C., Wong,K.G., Leach,S.E.,
Jacobs,B., Gezahegne,S., van 't Wout,A.B., Jacobson,L.P.,
Margolick,J.B. and Mullins,J.I.
TITLE HIV-1 variation before seroconversion in men who have sex with men:
analysis of acute/early HIV infection in the multicenter AIDS
cohort study
JOURNAL J. Infect. Dis. 197 (7), 1011-1015 (2008)
PUBMED 18419538
REFERENCE 2 (bases 1 to 1043)
Show all sequences for reference 2
AUTHORS Gottlieb,G.S., Heath,L., Nickle,D.C., Wong,K.G., Leach,S.L.,
Jacobs,B., Gezahegne,S., van't Wout,A.B., Jacobson,L.P.,
Margolick,J.B. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2007) Medicine/Infectious Diseases, University of
Washington, 960 Republican Street, Rosen Building, Seattle, WA
98195, USA
FEATURES Location/Qualifiers
source 1..1043
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="872v3_108"
/isolation_source="plasma from individual
preseroconversion"
/db_xref="taxon:11676"
/country="USA"
/note="subtype: B"
gene <1..>1043
/gene="env"
CDS <1..>1043
/gene="env"
/note="V1-V5 region"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABY53669.1"
/db_xref="GI:164416824"
/translation="KLTPLCVTLNCTNDLRNTTNATNNSWEKMETGEIKNCSFNITTS
IRDKMQKEYALFYKLDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHFCAPAG
FAILKCKDKKFSGKGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTDN
AKTIIVQLKEPVEINCTRPNNNTRRSIHIGPGKAFYTTGEIIGDIRQAHCNISRAKWN
NTLQQIVKKLKEQFGNKTIVFNHSSGGDPEIIMHSFNCAGEFFYCNSTQLFNSTWNNT
ERVNNTEGNGTIILPCRIKQIVNMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGN
SNSSNEIEVFRPG"
BASE COUNT 413 a 173 c 196 g 261 t
ORIGIN
1 taaaattaac cccactctgt gttactttaa attgcactaa tgatttgagg aatactacta
61 atgccactaa taatagttgg gaaaagatgg agacaggaga aataaaaaac tgctctttca
121 atatcaccac aagcataaga gataagatgc aaaaagagta tgcacttttt tataaacttg
181 atatagtacc aatagataat gataatacta gctataggtt gataagttgt aacacctcag
241 tcattacaca ggcctgtcca aaagtatcct ttgagccaat tcccatacat ttttgtgccc
301 cggctggttt tgcgattcta aaatgtaaag ataagaagtt cagtggaaaa ggaccatgta
361 caaatgtcag cacagtacaa tgtacacatg gaattaggcc agtagtatca actcaactgc
421 tgttaaatgg cagtctagca gaagaagagg tagtaattag atctgaaaat ttcacggaca
481 atgctaaaac cataatagta cagctaaagg aacctgtaga aattaattgt acaagaccca
541 acaacaatac cagaagaagc atacatatag gaccagggaa agcattttat acaacaggag
601 aaataatagg agatataaga caagcacatt gtaacattag tagagcaaaa tggaataaca
661 ctttacaaca gatagttaaa aaattaaaag aacaatttgg aaataaaacc atagtcttta
721 atcactcctc aggaggggac ccagaaatta taatgcacag ttttaattgt gcaggggaat
781 ttttctactg taattcaaca caactgttta atagtacttg gaataatact gaaagggtaa
841 ataacactga aggaaatggc acaatcatac tcccatgcag aataaaacaa attgtaaaca
901 tgtggcagga agtaggaaaa gcaatgtatg cccctcccat cagaggacaa attagatgtt
961 catcaaatat tacagggctg ctattaacaa gagatggtgg taatagtaat agcagcaacg
1021 agatcgaggt cttcagacct gga
//
last modified: Tue May 31 10:56 2022