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LOCUS EU177957 1006 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_103 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177957
VERSION EU177957.1 GI:163963795
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1006)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1006)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1006
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_103"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG; acronym: HIV-1"
gene <1..>1006
/gene="pol"
CDS <1..>1006
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50822.1"
/db_xref="GI:163963796"
/translation="PQITLWQRPLVTVRIXGQXIEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
IVIYQYMDDLYVGSDLEIGQHRAKXEELREHLLRWGLTTPDKKXQKEPPFLWMGYELH
P"
BASE COUNT 393 a 157 c 208 g 242 t 6 other
ORIGIN
1 cctcaaatca ctctttggca rcgaccctta gtcacagtaa gaatagrggg acagcyaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag acaatatgat
181 cagatactta tagaaatttg tgggaaaaag gccataggta cagtattggt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tacagagatg
421 gaaaaggaag gaaagatttc aaaaattgga cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaagayag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagaactc aagacttctg ggaagtccaa ttaggaattc ctcatcccgc gggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 gaagacttta gaaaatatac tgcattcact atacctagta taaataatga aacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag ggtcaccagc aatatttcag
781 gcaagcatga caaaaatctt agagcccttt agaacaaaaa atccagagat agtgatctac
841 caatatatgg atgatttata tgtaggatct gacttagaga tagggcagca cagagcaaaa
901 rtagaggagt tgagagagca tctattgaga tggggattaa ctacaccaga caaaaaacwt
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctg
//
last modified: Tue May 31 10:56 2022