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LOCUS	    EU177948		    1285 bp    RNA     linear	VRL 30-SEP-2008
DEFINITION  HIV-1 isolate GH_084 from Ghana pol protein (pol) gene, partial cds
ACCESSION   EU177948
VERSION     EU177948.1 GI:163963777
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1285)
            Show all sequences for reference 1
  AUTHORS   Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
	    Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
	    Thomson,M. and Najera,R.
  TITLE     High prevalence of unique recombinant forms of HIV-1 in Ghana:
	    molecular epidemiology from an antiretroviral resistance study.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
  PUBMED    18645511
REFERENCE   2 (bases 1 to 1285)
            Show all sequences for reference 2
  AUTHORS   Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
	    Thomson,M.M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1285
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="GH_084"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Ghana"
		     /note="subtype: CRF02_AG; acronym: HIV-1"
     gene	     <1..>1285
		     /gene="pol"
     CDS	     <1..>1285
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABY50813.1"
		     /db_xref="GI:163963778"
		     /translation="PQITLWQRPLVTVXVGGQVIEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICERKAIGTVLVGPTPVNIIGRNILTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILDPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKIKQLCKLLRGAKALTDVV
		     TLTEEAELELAENREILKEPVHGVYYDPTKDLVAEI"
BASE COUNT	507 a	 207 c	  273 g    294 t      4 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa ragtaggggg acaggtaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccta tagaaatttg tgaaaggaaa gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatattg actcagattg gttgtacttt aaattttcca 
     301 attagtccaa ttgaaactgt gccagtraaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaggcattaa cagacatttg tacagagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aaaagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc gggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 gaggatttta gaaagtatac tgccttcact atacctagtg taaataatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatatttcag 
     781 gcaagcatga caaaaatctt agatcctttt agagcaaaaa atccagagat agtgatctac 
     841 caatatatgg atgacttgta tgtaggatca gacttagaga tagggcaaca yagagcaaaa 
     901 atagaggagt tragagaaca tctgctgaaa tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aaataaagca gctgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat gtagtaacac tgactgagga agcagaatta 
    1201 gaattagcag agaacaggga aattctaaaa gaacctgtac atggggtata ttatgaccca 
    1261 acaaaagact tagtagcaga aatac
//
last modified: Tue May 31 10:56 2022


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