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LOCUS EU177948 1285 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_084 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177948
VERSION EU177948.1 GI:163963777
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1285)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1285)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1285
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_084"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG; acronym: HIV-1"
gene <1..>1285
/gene="pol"
CDS <1..>1285
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50813.1"
/db_xref="GI:163963778"
/translation="PQITLWQRPLVTVXVGGQVIEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIPIEICERKAIGTVLVGPTPVNIIGRNILTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILDPFRAKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKIKQLCKLLRGAKALTDVV
TLTEEAELELAENREILKEPVHGVYYDPTKDLVAEI"
BASE COUNT 507 a 207 c 273 g 294 t 4 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa ragtaggggg acaggtaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccta tagaaatttg tgaaaggaaa gccataggta cagtattagt aggacctaca
241 cctgtcaaca taattggacg aaatatattg actcagattg gttgtacttt aaattttcca
301 attagtccaa ttgaaactgt gccagtraaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaggcattaa cagacatttg tacagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aaaagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc gggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 gaggatttta gaaagtatac tgccttcact atacctagtg taaataatga gacaccaggg
721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatatttcag
781 gcaagcatga caaaaatctt agatcctttt agagcaaaaa atccagagat agtgatctac
841 caatatatgg atgacttgta tgtaggatca gacttagaga tagggcaaca yagagcaaaa
901 atagaggagt tragagaaca tctgctgaaa tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aaataaagca gctgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat gtagtaacac tgactgagga agcagaatta
1201 gaattagcag agaacaggga aattctaaaa gaacctgtac atggggtata ttatgaccca
1261 acaaaagact tagtagcaga aatac
//
last modified: Tue May 31 10:56 2022