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LOCUS EU177930 1263 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_062 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177930
VERSION EU177930.1 GI:163963741
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1263)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1263)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1263
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_062"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG; acronym: HIV-1"
gene <1..>1263
/gene="pol"
CDS <1..>1263
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50795.1"
/db_xref="GI:163963742"
/translation="PQITLWQRPVVTVKIGGQPIEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPSVFQASMTKILEPFRTKNPE
MVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDXV
TLTEEAELELAENREILKEPVHGVYYDPQ"
BASE COUNT 500 a 198 c 266 g 287 t 12 other
ORIGIN
1 cctcaaatca ctctttggca acgaccagta gtcacagtaa aaataggggg acagccaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa yttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 cagatactta tagaaatttg tggaaaaaag gccataggta cagtattrgt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg acycagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagaaatttg tacagagatg
421 gaaaaggaag ggaaaatttc aaaaataggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagaactc aagacttctg ggagatccaa ttaggaatac ctcatcccgc rggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat ayttttcagt yccmttagat
661 gaagacttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccatc agtatttcag
781 gcaagyatga caaaaatctt agagcccttt agaacaaaaa atccrgagat ggtgatctac
841 caatatatgg atgatttata tgtaggatct gacttagaga tagggcagca tagagcaaaa
901 atagaggagt tgagagaaca tctmytgaaa tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctatag agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaaagca actgtgtaaa
1141 ctcctcagag gagccaaagc actaacagat rtagtgacac tgactgagga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaacctgtac atggagtata ttatgaccca
1261 caa
//
last modified: Tue May 31 10:56 2022